PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G280600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CO-like
Protein Properties Length: 422aa    MW: 45755.2 Da    PI: 6.9535
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G280600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.89.2e-081356339
            zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39
                        +r C+ + + +++++C  ++ +lC+ C  + H+        H+v
  Brast02G280600.1.p 13 ARACDGCMRRRARWHCAADDAYLCQACDASVHSAnplarrhHRV 56
                        578*****************************668888886655 PP
2CCT66.29.3e-23351394144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk+a
  Brast02G280600.1.p 351 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRA 394
                         9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.8971158IPR000315B-box-type zinc finger
SMARTSM003362.6E-61158IPR000315B-box-type zinc finger
PfamPF006437.2E-61355IPR000315B-box-type zinc finger
CDDcd000214.23E-101458No hitNo description
PfamPF062031.2E-17351393IPR010402CCT domain
PROSITE profilePS5101715.993351393IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MTNAGAALGA RTARACDGCM RRRARWHCAA DDAYLCQACD ASVHSANPLA RRHHRVRLSS  60
SASSSSSSPA AASSQHAAGP DAPAWLHGLR RRPRTPRRKP GRINGSKQQH DALGTKAASA  120
PVPDLEADDE SLSGIILGAG NEVDQLADED DDLLYQVPVL DPMLAELYSH PMPADDDQKP  180
CCFAPLVVTE PSSSAGYGGV SGLADGDGFS GFDLVPDMEL ASFAADMESL LMGAVDSGYD  240
DLGFLDDEKP QMSHHLGFDD MQDDFESTVA PAPQEQQHQE DRKRKRPDQM ILKLDYDGVI  300
SSWTHHGASP WFYGERPHLD PSSDSWLDFP AGSGRGFGLG AAVTAVTGGE REARVSRYRE  360
KRRTRLFAKK IRYEVRKLNA EKRPRMKGRF VKRAALPPLP PRATPMVLAA PHGGAHGRYR  420
L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18894LRRRPRT
2361377RRTRLFAKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G280600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559520.10.0zinc finger protein CONSTANS-LIKE 6
TrEMBLI1GP670.0I1GP67_BRADI; Uncharacterized protein
STRINGBRADI1G11310.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100042228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-59B-box type zinc finger protein with CCT domain