PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast02G280600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | CO-like | ||||||||
Protein Properties | Length: 422aa MW: 45755.2 Da PI: 6.9535 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 23.8 | 9.2e-08 | 13 | 56 | 3 | 39 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39 +r C+ + + +++++C ++ +lC+ C + H+ H+v Brast02G280600.1.p 13 ARACDGCMRRRARWHCAADDAYLCQACDASVHSAnplarrhHRV 56 578*****************************668888886655 PP | |||||||
2 | CCT | 66.2 | 9.3e-23 | 351 | 394 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk+a Brast02G280600.1.p 351 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRA 394 9*****************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.897 | 11 | 58 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.6E-6 | 11 | 58 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 7.2E-6 | 13 | 55 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.23E-10 | 14 | 58 | No hit | No description |
Pfam | PF06203 | 1.2E-17 | 351 | 393 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.993 | 351 | 393 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence Send to blast |
MTNAGAALGA RTARACDGCM RRRARWHCAA DDAYLCQACD ASVHSANPLA RRHHRVRLSS 60 SASSSSSSPA AASSQHAAGP DAPAWLHGLR RRPRTPRRKP GRINGSKQQH DALGTKAASA 120 PVPDLEADDE SLSGIILGAG NEVDQLADED DDLLYQVPVL DPMLAELYSH PMPADDDQKP 180 CCFAPLVVTE PSSSAGYGGV SGLADGDGFS GFDLVPDMEL ASFAADMESL LMGAVDSGYD 240 DLGFLDDEKP QMSHHLGFDD MQDDFESTVA PAPQEQQHQE DRKRKRPDQM ILKLDYDGVI 300 SSWTHHGASP WFYGERPHLD PSSDSWLDFP AGSGRGFGLG AAVTAVTGGE REARVSRYRE 360 KRRTRLFAKK IRYEVRKLNA EKRPRMKGRF VKRAALPPLP PRATPMVLAA PHGGAHGRYR 420 L* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 88 | 94 | LRRRPRT |
2 | 361 | 377 | RRTRLFAKKIRYEVRKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast02G280600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003559520.1 | 0.0 | zinc finger protein CONSTANS-LIKE 6 | ||||
TrEMBL | I1GP67 | 0.0 | I1GP67_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G11310.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10004 | 22 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25440.1 | 1e-59 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Brast02G280600.1.p |