PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G271600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NF-YA
Protein Properties Length: 263aa    MW: 28431.7 Da    PI: 9.5638
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G271600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.63.7e-32168224158
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                         +ep+YVNaKQy++Il+RRq+Rak+e e+k  +k+rkpylheSRh+hA+rR+Rg+gGrF
  Brast02G271600.1.p 168 EEPVYVNAKQYHGILRRRQSRAKAELERKA-IKARKPYLHESRHQHAMRRARGTGGRF 224
                         69***************************9.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005219.1E-36166227IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.039167227IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.2E-27169224IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.7E-25170192IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860172192IPR018362CCAAT-binding factor, conserved site
PRINTSPR006167.7E-25201224IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MSGMGSRPEG TNLVEPRGQG ALPSGMSMQP WWTGSGLGAV SPAVVAPGSG IGMSLSSNPV  60
GDGATMGKTS DDAGADSSED SQRSGEPKDR SFGEEKHHAT SRMPAMASDY LAPYSQLELN  120
QPIASATYPY PDAYYAGMVG PYGAQAMTHF QLPGLTQSRM PLPLEISEEP VYVNAKQYHG  180
ILRRRQSRAK AELERKAIKA RKPYLHESRH QHAMRRARGT GGRFLNTKKN ENGASNERAE  240
PNKGDHNSEY HRVPPDLQLR QA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-20168232266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G271600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003560983.10.0nuclear transcription factor Y subunit A-4
RefseqXP_010231280.10.0nuclear transcription factor Y subunit A-4
RefseqXP_014752975.10.0nuclear transcription factor Y subunit A-4
RefseqXP_014752976.10.0nuclear transcription factor Y subunit A-4
TrEMBLI1GPC20.0I1GPC2_BRADI; Uncharacterized protein
STRINGBRADI1G11800.20.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82053649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.12e-44nuclear factor Y, subunit A9