PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G265300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GATA
Protein Properties Length: 307aa    MW: 32828.9 Da    PI: 4.6111
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G265300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.41.5e-16199235135
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C+nCgt++  Tp +Rrgp g++tLCnaCGl+++ k++
  Brast02G265300.1.p 199 CQNCGTSEkmTPAMRRGPAGPRTLCNACGLMWANKRT 235
                         *********************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009793.2E-95893IPR010399Tify domain
PROSITE profilePS5132014.4675893IPR010399Tify domain
PfamPF062002.1E-126192IPR010399Tify domain
PROSITE profilePS5101713.255127169IPR010402CCT domain
PfamPF062032.4E-14127167IPR010402CCT domain
SMARTSM004012.5E-8193246IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.9E-10197241No hitNo description
CDDcd002021.88E-14198237No hitNo description
Gene3DG3DSA:3.30.50.102.0E-13198237IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440199226IPR000679Zinc finger, GATA-type
PfamPF003204.2E-14199235IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MSDAAASQDA DADMRDADAA APAASEDDAE EEEEGDEEGE EELALAEEPP VSALVPALPG  60
NPNQLTLLFQ GEVYVFESVT PDKVQAVLLL LGTGEIPPEL AGMVLRSQHE NRGYDDLLQR  120
TDIPAKRVAS LIRFREKRKG RNFDKKIRYA VRKEVALRMQ RRKGQFAGRA NLEGESPSPG  180
CDPASQGSGQ DLLSRESKCQ NCGTSEKMTP AMRRGPAGPR TLCNACGLMW ANKRTLRSCL  240
KAKVEAPMVA IEQSNPVASQ CQIGIDIKAL TSQNNDNVAK GNVEAIGDSA LANVAVIEGA  300
PKAQSE*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G265300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3547461e-143AK354746.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1010K24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231508.10.0GATA transcription factor 18 isoform X1
SwissprotA2XKR71e-137GAT18_ORYSI; GATA transcription factor 18
TrEMBLI1GPJ01e-173I1GPJ0_BRADI; Uncharacterized protein
STRINGBRADI1G12330.11e-161(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-67ZIM-like 1