PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G264700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 494aa    MW: 56748.4 Da    PI: 8.187
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G264700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1371.1e-112613091
                FAR1 30 krtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91
                        +r + Cs++g+ +  k   e+++r + ++r+gCka +k+k++  ++w  +++eleH+H+l+p
  Brast02G264700.1.p  2 SRLYACSRQGSGTFYKAG-EERKRAKISKRVGCKAAVKIKLK-GNEWFYENVELEHTHALNP 61
                        5779*********99988.99999******************.99**************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.2E-8261IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MSRLYACSRQ GSGTFYKAGE ERKRAKISKR VGCKAAVKIK LKGNEWFYEN VELEHTHALN  60
PNACEVKHMC SHKNKNPGIM EYVDELQQSG VSPISTLNVL STLNGDPELL PMNECDLRNR  120
RAANLREEQV DDVKKLMALF SEYRAVVKNI FWSHASCQAN YAEFGDVVTF DTTYRSNFYR  180
MPLGMFTQKT FEWVFQTFRN CMEGKDPICI LTEFENAWLE MVSEYELESD PTLCSLYELR  240
ASWVATYFKD VFCGRMTSTQ RSESTNRMVK RHHVNDSTPL HMFAKKMYQV LQKRKDAEGE  300
ETVASQDPLA TKTNYPLECQ LSRIYTRAVF KKYQESYVAG TSFRTKNDGP LLINEQIQKL  360
PSKYVLRWYT RNAHIDLHYD MNDTIQTGHD GLSKGGRNSN MLREAYATIR AGIRSTVGYQ  420
RYMTVMKELR EQLEGIPVDE MPVRDETTND DPPEQLATIL KAPPKSSTKG SRSEDGAPPI  480
IGLWQLWPTT RSQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G264700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K2CZY20.0A0A2K2CZY2_BRADI; Uncharacterized protein
STRINGBRADI4G22000.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-32FAR1-related sequence 5