PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G262900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 473aa    MW: 51280.4 Da    PI: 6.5734
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G262900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.41.6e-10118209198
                         EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         f+k+l  ++ + +  +v+pk +ae+     +++ +e++tl l d + ++  + l  ++ +    lt+GW ++ ++++L+  D vvF ++  
  Brast02G262900.1.p 118 FVKQL--PYKHDEEAFVIPKACAESLglglNHN-TETQTLHLLDVHRKELHFGL--SGDG---GLTTGWDQYIRDKELNHMDAVVFIRS-- 198
                         88999..88888888********999**86544.4678****************..5554...39*********************943.. PP

                         SEE..EEEEE- CS
                  B3  88 sefelvvkvfr 98 
                          +++l ++ +r
  Brast02G262900.1.p 199 ANGQLIIGSRR 209
                         55656766655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.51E-9115213IPR015300DNA-binding pseudobarrel domain
CDDcd100172.86E-7117209No hitNo description
Gene3DG3DSA:2.40.330.104.1E-12117220IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0045118211IPR003340B3 DNA binding domain
PfamPF023621.2E-7118209IPR003340B3 DNA binding domain
PfamPF065074.5E-5236319IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MAQPPPAVAP PPTAELDREV WLACAGPYAR LPDTGSRVYY FPRGHADQCL HGRGLPLPVL  60
TMDAVFPCTV SAVELFYHAV TDDPYAIITL LRNDGQGQAQ PSDHLQANPT DSKSAEYFVK  120
QLPYKHDEEA FVIPKACAES LGLGLNHNTE TQTLHLLDVH RKELHFGLSG DGGLTTGWDQ  180
YIRDKELNHM DAVVFIRSAN GQLIIGSRRG SSCRYRASEQ VRDVMKASTR AVTTSRVTYY  240
PRQGWDFVVL REEVDAANAR KIDWQRGMKV RMVCPVDGLE LESSRGQRRP DFIRGTVAAV  300
KNKNTTWCKL EINWEISSWS SSPEGGVNVW RVELQGDPSP TNKRKMSQSH YSAADHPSSK  360
SKVLMPGATT AQYMAGSPIA AGVQGGRQAS IPDALSSSST PVSETLFGAE MAPTSGVPTQ  420
NIALSSSTAS STELSGVKMA PGVAPVDGTH KEDNPAKNPP AKDDDQNPDE SA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-201633319353Auxin response factor 1
4ldw_A1e-201633319353Auxin response factor 1
4ldw_B1e-201633319353Auxin response factor 1
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G262900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229512.10.0auxin response factor 13-like
TrEMBLA0A2K2DJ580.0A0A2K2DJ58_BRADI; Auxin response factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4981922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.12e-31auxin response factor 16