PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G259000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 354aa    MW: 37191.7 Da    PI: 4.7014
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G259000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.33.1e-14156202455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h ++Er+RR++iN++f eL +++P +     kK++Ka+iL  A++++k+Lq
  Brast02G259000.1.p 156 DHIIAERKRREKINQRFIELSTVIPGL-----KKMDKATILSDATRHVKDLQ 202
                         699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.58152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-16156213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.7E-12156202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-17156210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.61E-15157206No hitNo description
SMARTSM003531.4E-14158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MDESALFMEW AMETLEHEQL PLPAVVSGDE AAATCFPSLQ ALRDVSHAAL VLEELLTDAH  60
AANSGSSGET DGGSGSANFS SMDQQHEVWL PPNANVSLPA PVPVVSWNFS AASAQPDAAA  120
DPVKPYEPGP GLTTPRRASA PKSASSAPSP APYAQDHIIA ERKRREKINQ RFIELSTVIP  180
GLKKMDKATI LSDATRHVKD LQEKIKALEA ASGSNGSRSV ETVVLVKKPC YGAPAAEENG  240
SPSSASSGAP APGRNPQPLP EIEARFAENG VMVRILCDDA KGVVVRVLSE VEDGLRLSVT  300
HANVMAFTAC TLIITITAKV EEGFNVTAEE VVGRLNSALQ QHSTSISTEE TGN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160165ERKRRE
2161166RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G259000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559601.11e-175transcription factor bHLH18
TrEMBLA0A0Q3KS321e-174A0A0Q3KS32_BRADI; Uncharacterized protein
STRINGBRADI1G12770.11e-164(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.17e-40bHLH family protein