PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G258700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 329aa    MW: 35192.9 Da    PI: 6.9372
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G258700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH421.6e-13164210455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h ++Er+RR+ +N++f eL +++P +     kK++K +iL+ A +Y+k+L+
  Brast02G258700.1.p 164 GHIMAERKRRETMNQRFLELSTVIPGL-----KKMDKGTILTDAARYVKKLE 210
                         599************************.....9****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.205160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-11164210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.11E-14165214No hitNo description
SuperFamilySSF474598.11E-16165227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-17165221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.6E-14166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.612258328IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MVCPYHVQGF MRGWMSCQQH RLARRTDGMD DSSLFMQWAV NALQQQDPEA VADDGGSENA  60
FASLHGLCEA SAEPTTGGAI ESWRSPDDNV GCGWAIGLDA AMDQQGGLST SPNSAGPLAP  120
SRSISPANSL PMSWSFNAAL PQPTSAPCVP RRAARTGPSS SSQGHIMAER KRRETMNQRF  180
LELSTVIPGL KKMDKGTILT DAARYVKKLE ERIKSLEAAS SGRRISIESV VLVAPRPSSA  240
VGTPAPEIKA TLSENNVVVR IHCENGKGLV VRVLAEVEEL HLRIVHSNVT PFSASTVVIT  300
AMAKVEEGFT INAEEIVGRL NSVLHNTP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168173ERKRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G258700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559602.21e-157transcription factor bHLH19
TrEMBLA0A0Q3JPJ11e-156A0A0Q3JPJ1_BRADI; Uncharacterized protein
STRINGBRADI1G12780.11e-131(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-28bHLH family protein