PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast02G252100.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

FAR1

Protein Properties

Length: 1064aa MW: 116001 Da PI: 5.7136

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast02G252100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	101.6	7.6e-32	73	173	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...........tekerrtraetrtgCkaklkvkkekdgkwevtkl 81 fYn YA++vGFs+r+s +++s+r+g+i++r+fvC keg+r+ + k+ + + rrtra+tr+gCka+++vkk+++gkw +tkl Brast02G252100.1.p 73 FYNVYAHRVGFSTRISVMHRSRRDGSIMSRQFVCAKEGFRTYRGKNdglasspggedSGRGRRTRAVTRVGCKAMIRVKKQDNGKWSITKL 163 *****************************************************99999*************************** PP FAR1 82 eleHnHelap 91 e+ HnH+l+p Brast02G252100.1.p 164 ETAHNHPLVP 173 *****986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.7E-30	73	173	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.3E-24	291	381	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.262	569	605	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	6.4E-9	575	604	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.6E-5	580	607	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1064 aa Download sequence Send to blast
MERGAAGSDQ GTPDSEMGDG DNDSVGYGTE MEMDAGNGSA GAPPAYAARP SVHDGVDPFE 60 GMEFDDEEDA WTFYNVYAHR VGFSTRISVM HRSRRDGSIM SRQFVCAKEG FRTYRGKNDG 120 LASSPGGEDS GRGRRTRAVT RVGCKAMIRV KKQDNGKWSI TKLETAHNHP LVPQNQAHCL 180 RPHKPLSECG KQRSFGVRRN GGMFLAIEPP PPPLTPPVPQ ASIAQLVPHY IGDGIGTAAR 240 VILDYVKRMQ AEDPAFFYAM QFVEGHPVGN IFWSDARARM AFKDFGDAVF LDDYCKRNKY 300 ELPLVTFTGV NHHCQPVLFG CAVMRDSSEA SFVWLFETLL LAMSGQHPAS LTTEYDSAIQ 360 SAVHKVLPQT RHRFCRWHIL NEAQYKLSHL VNAFPSFHDE LVNCINISET VDEFEANWQA 420 LISKVGSGKN EWLDLMYNCR QQWVPVYLRD TFFGDEPSRQ ECTSRSSFYE SYIIAKTNSQ 480 SFIQQYEKAL DSCYEKEVRE EFETKYSLPD IKTSSPIEKQ GADLYTRTIF LKFQQELIDA 540 SASTLEMVGE DRKACMYKVT TSQGSGKPHM VQFSSSESSA KCSCKMFEYF GIVCRHILTV 600 FGAQGVLTLP SQYIVKRWTK DAIDRCSNKK FDEVSRAKEP KEEQRCTVED GEQSQTWRYN 660 NLCREALRYA EEGASSAEVY IVAMQALEEA SNKVNMAKRS VGQVAPLAVM PIAAQPPESS 720 RKNQDSFGQP KKRKRNSNNS RENPASNQFM YTQQPVNFPS TSNGSQGPSQ VVAAAPVSLC 780 TEYGQTSGAN NSTDGSTTPA SVAVDKLYGL SDRGASTSAP SSSANVLQGG ETKSSGIASQ 840 TNEGHELCQA NGNKGGDIDM ANSTASLQLV TVPIGFCMPS MDNSKTSTAG ITSSNSGGMM 900 SNGNASFGLH QSQSSAQVPA THPEAKTRIN NIDSPATPEG SSIRAAAIAA GARIASPSDA 960 ASIIKASQSK GAIHIRPGES LPNYLKPLTP KPLSSLPPVN LPSSGHASSS SHIQLGQIYM 1020 GDSAAAKDSI FGSTDGSDED TDDDDEDSDD DDERLTGDEA EQE*

Sequence ? help Back to Top

Protein Sequence Length: 1064 aa Download sequence Send to blast

MERGAAGSDQ GTPDSEMGDG DNDSVGYGTE MEMDAGNGSA GAPPAYAARP SVHDGVDPFE  60
GMEFDDEEDA WTFYNVYAHR VGFSTRISVM HRSRRDGSIM SRQFVCAKEG FRTYRGKNDG  120
LASSPGGEDS GRGRRTRAVT RVGCKAMIRV KKQDNGKWSI TKLETAHNHP LVPQNQAHCL  180
RPHKPLSECG KQRSFGVRRN GGMFLAIEPP PPPLTPPVPQ ASIAQLVPHY IGDGIGTAAR  240
VILDYVKRMQ AEDPAFFYAM QFVEGHPVGN IFWSDARARM AFKDFGDAVF LDDYCKRNKY  300
ELPLVTFTGV NHHCQPVLFG CAVMRDSSEA SFVWLFETLL LAMSGQHPAS LTTEYDSAIQ  360
SAVHKVLPQT RHRFCRWHIL NEAQYKLSHL VNAFPSFHDE LVNCINISET VDEFEANWQA  420
LISKVGSGKN EWLDLMYNCR QQWVPVYLRD TFFGDEPSRQ ECTSRSSFYE SYIIAKTNSQ  480
SFIQQYEKAL DSCYEKEVRE EFETKYSLPD IKTSSPIEKQ GADLYTRTIF LKFQQELIDA  540
SASTLEMVGE DRKACMYKVT TSQGSGKPHM VQFSSSESSA KCSCKMFEYF GIVCRHILTV  600
FGAQGVLTLP SQYIVKRWTK DAIDRCSNKK FDEVSRAKEP KEEQRCTVED GEQSQTWRYN  660
NLCREALRYA EEGASSAEVY IVAMQALEEA SNKVNMAKRS VGQVAPLAVM PIAAQPPESS  720
RKNQDSFGQP KKRKRNSNNS RENPASNQFM YTQQPVNFPS TSNGSQGPSQ VVAAAPVSLC  780
TEYGQTSGAN NSTDGSTTPA SVAVDKLYGL SDRGASTSAP SSSANVLQGG ETKSSGIASQ  840
TNEGHELCQA NGNKGGDIDM ANSTASLQLV TVPIGFCMPS MDNSKTSTAG ITSSNSGGMM  900
SNGNASFGLH QSQSSAQVPA THPEAKTRIN NIDSPATPEG SSIRAAAIAA GARIASPSDA  960
ASIIKASQSK GAIHIRPGES LPNYLKPLTP KPLSSLPPVN LPSSGHASSS SHIQLGQIYM  1020
GDSAAAKDSI FGSTDGSDED TDDDDEDSDD DDERLTGDEA EQE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast02G252100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003559622.3	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	I1GPV5	0.0	I1GPV5_BRADI; Uncharacterized protein
STRING	BRADI1G13310.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-158	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Brast02G252100.1.p