PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G243400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 305aa    MW: 33422 Da    PI: 7.6624
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G243400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.64.4e-11555146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                        ++rWT eE+  l  +++++G g+Wk I r          R+  ++k++w++
  Brast02G243400.1.p  5 KQRWTSEEEAALRAGIAKHGVGSWKVILRDPEfssilRYRSNVDLKDKWRN 55
                        79***********************************99***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.96161IPR017930Myb domain
SuperFamilySSF466891.15E-14258IPR009057Homeodomain-like
SMARTSM007173.6E-7459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-12456IPR009057Homeodomain-like
PfamPF002492.8E-7555IPR001005SANT/Myb domain
CDDcd116601.24E-18657No hitNo description
SuperFamilySSF467858.71E-14114194IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005263.1E-8114180IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.2E-13116185IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150421.067117185IPR005818Linker histone H1/H5, domain H15
PfamPF005386.2E-8122178IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MGAPKQRWTS EEEAALRAGI AKHGVGSWKV ILRDPEFSSI LRYRSNVDLK DKWRNINTIF  60
TGLGSREKGR AATKKNRATP KNSDHSVAIS IVASDVDEQP IVSVCSGVWN SLQPKKSPLR  120
LNDIILESVK NLNEPTGSHR TTIANYIEEQ YGPSDDFGHI LSAKLKDLTT SGKLIKVNRK  180
YRIAPGSLYS EERNPKILLL EDVRREPLKI GNDDSKTLTK YQVDAELAHM LTMTAEEAAS  240
TAARAVIEAE ALMAEAEAAA REAEAAEADA LAAQAFAEAA LLTLKNRNVT ELMLKMCHNL  300
SVTD*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G243400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024313575.11e-158LOW QUALITY PROTEIN: single myb histone 6-like
SwissprotC0HIA31e-115SMH6_MAIZE; Single myb histone 6
TrEMBLA0A2K2DJD31e-147A0A2K2DJD3_BRADI; Uncharacterized protein (Fragment)
STRINGBRADI1G13880.11e-137(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-61telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]