PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G242900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 898aa    MW: 97100.5 Da    PI: 6.696
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G242900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.64.3e-1872129457
                         -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                           ++t+eq+++Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Brast02G242900.1.p  72 YVRYTPEQVDALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 129
                         6789****************************************************97 PP
2START174.75.8e-552204272204
                         HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EE CS
               START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..ga 90 
                         +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++ +++l+ i +g  g+
  Brast02G242900.1.p 220 IAEETLAEFLSKATGTAVDWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCVDVLQIIPTGngGT 309
                         68999*****************************************************.8888888888********************** PP

                         EEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
               START  91 lqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                         ++l++++++a+++l++ Rdf+++Ry+  l++g++vi+++S+++ +  p+   ++++vRae+lpSg+li+p+++g+s +++v+hvdl+++++
  Brast02G242900.1.p 310 IELIYMQTYAPTTLAApRDFWILRYTSGLEDGSLVICERSLTQATGGPSgpnTPNFVRAEVLPSGYLIRPCEGGGSMIHIVDHVDLDAWSV 400
                         **************999*****************************999999*************************************** PP

                         HHHHHHHHHHHHHHHHHHHHHHTXXXX CS
               START 178 hwllrslvksglaegaktwvatlqrqc 204
                         +++lr+l++s  + ++k++ a+l++ +
  Brast02G242900.1.p 401 PEVLRPLYESPKILAQKMTIAALRHIR 427
                         **********************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575129No hitNo description
PROSITE profilePS5007115.32166130IPR001356Homeobox domain
SMARTSM003892.6E-1568134IPR001356Homeobox domain
SuperFamilySSF466891.11E-1670133IPR009057Homeodomain-like
CDDcd000864.49E-1671131No hitNo description
PfamPF000461.2E-1572129IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.2E-1873129IPR009057Homeodomain-like
CDDcd146862.56E-6123162No hitNo description
PROSITE profilePS5084827.299210410IPR002913START domain
CDDcd088751.51E-68214430No hitNo description
Gene3DG3DSA:3.30.530.207.0E-24218410IPR023393START-like domain
SMARTSM002343.1E-48219429IPR002913START domain
SuperFamilySSF559617.14E-39220430No hitNo description
PfamPF018529.1E-53220427IPR002913START domain
PfamPF086703.0E-50754896IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 898 aa     Download sequence    Send to blast
MCALSRGGHD AATPVAVAPL LTTHSVGGCR PGSGLRMAGA MVAGLHGGGR DRDRDRSSPG  60
GGGAPQVDTG KYVRYTPEQV DALERVYSEC PKPSSLRRQQ LIRECPILSN IEPKQIKVWF  120
QNRRCREKQR KEASRLQTVN RKLSAMNKLL MEENDRLQKQ VSRLVYENGY MRTHLSNPSV  180
ATTDTSCESV VTSGQHQQQQ NPAVPRPQRD ANNPAGLLAI AEETLAEFLS KATGTAVDWV  240
QMVGMKPGPD SIGIIAVSHN CSGVAARACG LVSLEPTKVA EILKDRPSWY RDCRCVDVLQ  300
IIPTGNGGTI ELIYMQTYAP TTLAAPRDFW ILRYTSGLED GSLVICERSL TQATGGPSGP  360
NTPNFVRAEV LPSGYLIRPC EGGGSMIHIV DHVDLDAWSV PEVLRPLYES PKILAQKMTI  420
AALRHIRQIA HESSGEMPYG GGRQPAVLRT FSQRLSRGFN DAVNGFLDDG WSLMSSDGAE  480
DVTIAINSSP NKLVGSHVNS SQLFSAIGGG ILCAKASMLL QNVPPALLVR FLREHRSEWA  540
DPGVDAYSAA ALRASPYAVP GLRASGFMGS QVILPLAHTL EHEEFLEVIR LEGHSLCHDE  600
VVLSRDMYLL QLCSGVDENA AGACAQLVFA PIDESFADDA PLLPSGFRVI PLDAKTDAPS  660
ATRTLDLAST LEVGSGGTRA AGDASSTSNT RSVLTIAFQF SYENHLRENV AAMARQYVRT  720
VVASVQRVAM AIAPSRLGGQ IEMKNPPGSP EAHTLARWIG KSYRFHTGAE LLCTDSQSPD  780
ASLKVLWQHS DSIMCCSLKA APVFTFANQA GLDMLETTLI ALQDISLEKI LDDDGRKALC  840
SEFPKIMQQG FAYLPGSVCV SSMGRPVSYE QAVAWKVLSE DDTPHCLAFM FVNWSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G242900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3642150.0AK364215.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2022L20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003562005.10.0homeobox-leucine zipper protein HOX32
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLI1GQ250.0I1GQ25_BRADI; Uncharacterized protein
STRINGBRADI1G13910.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]