PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G242300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family LSD
Protein Properties Length: 271aa    MW: 29855.6 Da    PI: 9.1813
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G242300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD128.52.5e-0990114125
             zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                         C+gCr +L YP GApsV+C  C+++
  Brast02G242300.1.p  90 CHGCRRVLCYPSGAPSVCCGACQAI 114
                         ***********************97 PP
2zf-LSD139.59.5e-13129153125
             zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                         CggCrtlL+Y+r+A  VRC++C tV
  Brast02G242300.1.p 129 CGGCRTLLMYTRNADTVRCSCCRTV 153
                         ************************9 PP
3zf-LSD149.38.2e-16167191125
             zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                         Cg+Crt+L+YP+GApsV+CalC+ V
  Brast02G242300.1.p 167 CGQCRTTLMYPYGAPSVKCALCNYV 191
                         ***********************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.8E-1087117IPR005735Zinc finger, LSD1-type
PfamPF069439.5E-790114IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.9E-14126156IPR005735Zinc finger, LSD1-type
PfamPF069431.5E-10129153IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.9E-12164192IPR005735Zinc finger, LSD1-type
PfamPF069433.2E-14167191IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
LSAVPRPESV NQRDYQSSFP RLRSQIVKYS QSGFNFSRPD PLSPLTRHRR RREPPPRVPP  60
SRIELFSEPL ERGDERPVSP RAGMQSQIVC HGCRRVLCYP SGAPSVCCGA CQAITIVPPP  120
ALEMAQLICG GCRTLLMYTR NADTVRCSCC RTVNLVRSVN NIAHVNCGQC RTTLMYPYGA  180
PSVKCALCNY VTNTGINTMA PTPCPMPTPN GSPYNVASTS PTKFFLKTKS DLFIFWQSTS  240
QPQNVTVVVE NPMTVDGKGK LVSPLFFCLY *
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G242300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003562028.11e-105protein LOL3
SwissprotQ6ASS23e-87LOL3_ORYSJ; Protein LOL3
TrEMBLA0A0Q3GUL91e-155A0A0Q3GUL9_BRADI; Uncharacterized protein
STRINGBRADI1G13970.11e-115(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.12e-51lsd one like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]