PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G242100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 415aa    MW: 43841.1 Da    PI: 7.7114
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G242100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.96.5e-17251297455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  Brast02G242100.1.p 251 VHNLSERRRRDRINEKMKALQELIPHC-----NKTDKASMLDEAIEYLKTLQ 297
                         6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-21245314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.266247296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.71E-18250301No hitNo description
Gene3DG3DSA:4.10.280.104.5E-22251305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-14251297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-18253302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MGDASRPLGV DDDLMELLWC NGHVVMQSQT HRKLPPRPEK PAAAAVMQED EAGLWFPFSH  60
ADSLDKDIFS DLFCEAAPAA GTGVKPDCRS GKASDAPGEL MPPPKSTRAS MADGGELSGL  120
VQARTGKAAS ASSIGASFCG SSNQVQVQSA GTAGLQSAVG GGINANASRG GGGHEATVAS  180
SSGRSNGCFT TTATTTEPTS TSHRSGKRKR LDSTEDSESP SGEDAESESL ALERKPPQKL  240
ATARRSRAAE VHNLSERRRR DRINEKMKAL QELIPHCNKT DKASMLDEAI EYLKTLQMQV  300
QMMWMGSGMA PPAVMFPGMH QYLPSRMPSF MAPQPAAPQS LPEHYAHFLG VNHHQQHYAA  360
QGMGYYPLGP KAVQQSPALP IHHVPAANGG TPAPAAAAAT NNNMPGHGMH PNRR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1255260ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G242100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKX0854221e-138KX085422.1 Triticum aestivum stress-responsive bHLH transcription factor (bHLH39) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559649.10.0transcription factor PIF1
RefseqXP_014752368.10.0transcription factor PIF1
RefseqXP_014752369.10.0transcription factor PIF1
RefseqXP_014752371.10.0transcription factor PIF1
RefseqXP_024318757.10.0transcription factor PIF1
RefseqXP_024318764.10.0transcription factor PIF1
RefseqXP_024318772.10.0transcription factor PIF1
RefseqXP_024318776.10.0transcription factor PIF1
RefseqXP_024318781.10.0transcription factor PIF1
RefseqXP_024318785.10.0transcription factor PIF1
RefseqXP_024318787.10.0transcription factor PIF1
RefseqXP_024318789.10.0transcription factor PIF1
RefseqXP_024318793.10.0transcription factor PIF1
TrEMBLA0A0Q3KSJ60.0A0A0Q3KSJ6_BRADI; Uncharacterized protein
STRINGBRADI1G13980.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31073677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.31e-41phytochrome interacting factor 3-like 5