PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast02G236000.3.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

G2-like

Protein Properties

Length: 276aa MW: 30167.2 Da PI: 9.672

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast02G236000.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.9	8.2e-32	163	216	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Brast02G236000.3.p 163 PRMRWTTALHAHFVQAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 216 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.4E-28	160	216	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.11E-15	160	216	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.1E-24	163	216	IPR006447	Myb domain, plants
Pfam	PF00249	9.0E-8	164	215	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MHLPHLLTHR TQTPILQESC TTHDLISQTL LSIHFPPNKK LPTPTQTHFP TLLDRRVSSL 60 ASKLAMATAA APDLSLNISP PSPADMAGTS SGCDDMAISA ETRLCLGFDM ATPAQRDNGH 120 CDLQQQRLHQ PSQIPRFKKS SGDSQAGSSK ERSGSGKKSS RAPRMRWTTA LHAHFVQAVQ 180 LLGGHERATP KSVLELMNVK DLTLAHVKSH LQMYRTVKGT ATDRSCAAGH VQMRDMGFLR 240 RGREVDGFDV FNNITSNTRD GGEVQYSEML QHSLA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-17	164	218	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-17	164	218	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-17	164	218	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-17	164	218	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast02G236000.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014754878.1	1e-119	uncharacterized protein LOC100834660
TrEMBL	A0A0Q3NBE2	1e-118	A0A0Q3NBE2_BRADI; Uncharacterized protein
STRING	MLOC_10064.1	2e-99	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42630.2	6e-33	G2-like family protein

Link Out ? help Back to Top
Phytozome	Brast02G236000.3.p