PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast02G235600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | B3 | ||||||||
Protein Properties | Length: 164aa MW: 18815.7 Da PI: 6.6681 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 42.9 | 8.5e-14 | 13 | 78 | 28 | 97 |
--..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 28 gkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +k e +++le+++g s++v + +k++g++v+ +GW +Fv+ +L+ g++++F+++g+s+f v +f Brast02G235600.1.p 13 LKGEIRGEIKLETRNGCSYTVGI--SKNQGKVVFMAGWGQFVENFDLQMGESIIFRYNGSSQF--SVVMF 78 44445569***************..*********************************99999..66665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.744 | 1 | 81 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.1E-11 | 11 | 79 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.76E-12 | 13 | 79 | No hit | No description |
SuperFamily | SSF101936 | 2.94E-14 | 14 | 80 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.3E-15 | 15 | 88 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MFLMGDFQHE MRLKGEIRGE IKLETRNGCS YTVGISKNQG KVVFMAGWGQ FVENFDLQMG 60 ESIIFRYNGS SQFSVVMFDK LGREKALSVI VDALWPHLQE SHTDVTETVC KKGKNMGAPC 120 ERCKWRGGLY YRDLDDREKH FLMVLMGDFQ HEMVTDPIYI ISI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast02G235600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014750916.1 | 7e-88 | putative B3 domain-containing protein Os08g0325100 | ||||
Swissprot | Q6Z0D9 | 1e-38 | Y8347_ORYSJ; B3 domain-containing protein Os08g0324300 | ||||
TrEMBL | A0A0Q3J8H0 | 2e-86 | A0A0Q3J8H0_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G14500.1 | 2e-86 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12482 | 15 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-10 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast02G235600.1.p |
Publications ? help Back to Top | |||
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