PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G235500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 669aa    MW: 76479.9 Da    PI: 8.4376
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G235500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.62.2e-18331121398
                         TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                  B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                          + +++p +f++++ g+   + +++le+++grs++v +  +k++++ vlt+GW  Fvk  +L+ g +vvF+++g+s+f  +v vf+
  Brast02G235500.1.p  33 ADEMIVPDEFVRRFRGE--IPGEIKLETRNGRSYTVGV--SKYPDKLVLTAGWGAFVKTYDLQMGNSVVFRYNGDSQF--NVIVFD 112
                         46799*********766..4558***************..**********************************9999..777776 PP
2B348.61.4e-15362449495
                         E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
                  B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 
                         v+++++v+    l ++k++++++ g+k +    +  +++g++Wev +   +++g+  + +GW++Fvk+n+L+ gD+++F+l ++ +  +  
  Brast02G235500.1.p 362 VMSKHNVTGPITLNVSKQYVKRYVGNKVR---CICLQRRGKKWEVHF--GGRPGEKRIVAGWRKFVKDNDLEIGDICIFELLKNyMMCTIE 447
                         566777777788999********878766...566778*********..9999999999*********************98776655555 PP

                         EE CS
                  B3  94 vk 95 
                         v+
  Brast02G235500.1.p 448 VH 449
                         55 PP
3B343.55.8e-14570664199
                         EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 
                         f+ v+ + +v+ +  l+++kk+ae++ g  + +  ++ le   g++ +v+l    +++ +   +GW +Fv+++++++gD+++F+l ++  +
  Brast02G235500.1.p 570 FVAVMHKTNVTGRFTLSISKKYAEKYlG-GEVQ--KIWLER-LGERCQVNL--GCRPQDTRVVGGWAKFVRDHEVEVGDICLFELLKNrVS 654
                         6778888899999*************64.4345..577766.677888888..44555555679********************8876688 PP

                         E..EEEEE-S CS
                  B3  90 felvvkvfrk 99 
                          +++v+++r+
  Brast02G235500.1.p 655 CTMKVHIIRA 664
                         8899999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.61E-2018113IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.0E-2019112IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.56221114IPR003340B3 DNA binding domain
SMARTSM010191.1E-824117IPR003340B3 DNA binding domain
PfamPF023629.0E-1534112IPR003340B3 DNA binding domain
CDDcd100178.29E-1836112No hitNo description
Gene3DG3DSA:2.40.330.102.2E-19352451IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-18354441IPR015300DNA-binding pseudobarrel domain
CDDcd100173.57E-15357451No hitNo description
SMARTSM010193.4E-7359454IPR003340B3 DNA binding domain
PROSITE profilePS5086311.716359454IPR003340B3 DNA binding domain
PfamPF023625.1E-13362450IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-20561665IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.29E-18563665IPR015300DNA-binding pseudobarrel domain
CDDcd100172.14E-18568663No hitNo description
SMARTSM010192.4E-6570665IPR003340B3 DNA binding domain
PROSITE profilePS508639.686570665IPR003340B3 DNA binding domain
PfamPF023627.2E-13570664IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MCCERCKRRD ERDYCLLDDR EKHFLMFMED GCADEMIVPD EFVRRFRGEI PGEIKLETRN  60
GRSYTVGVSK YPDKLVLTAG WGAFVKTYDL QMGNSVVFRY NGDSQFNVIV FDRFGREKAS  120
SVVADDDPLS PHEQEKNRGS TESLDRSHSH PHRMEVQSPT ENVNRSQRHP QPMQMPSPTE  180
NVDLSQEHPQ PMQVPPPSEN MDLSQRHPQP MHLQSPTGNV DGFVGLSRPM EVQPPTENVN  240
SFVGHSEQAQ MQPPTDTMNH CSYHHQTVQM QLSCSHTKRQ SKLQNDYSNQ GNKTATSPSG  300
TPSELLRANV FGDSLSQEDD TEVSEKPRYM LGRNTRLNSA QEKEVDEMVQ HIHHENPVLV  360
AVMSKHNVTG PITLNVSKQY VKRYVGNKVR CICLQRRGKK WEVHFGGRPG EKRIVAGWRK  420
FVKDNDLEIG DICIFELLKN YMMCTIEVHI IHIKDLDSSS QIGCNQVMRS SKIGAWSHSR  480
PELVPTETMK HSMVRPQPTQ TQSPPIKRKM PLQRVQTLGR ERHSLFSEDS NGDVDTLTDY  540
IAVHKKRLTK IQKREVKKMV QSIDSEIPIF VAVMHKTNVT GRFTLSISKK YAEKYLGGEV  600
QKIWLERLGE RCQVNLGCRP QDTRVVGGWA KFVRDHEVEV GDICLFELLK NRVSCTMKVH  660
IIRAKNVS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G235500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014752321.10.0putative B3 domain-containing protein Os08g0325100 isoform X1
RefseqXP_014752322.10.0putative B3 domain-containing protein Os08g0325100 isoform X1
RefseqXP_014752323.10.0putative B3 domain-containing protein Os08g0325100 isoform X1
RefseqXP_014752324.10.0putative B3 domain-containing protein Os08g0325100 isoform X1
TrEMBLI1GQ920.0I1GQ92_BRADI; Uncharacterized protein
STRINGBRADI1G14510.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124821536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-13B3 family protein