PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast02G235100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | B3 | ||||||||
Protein Properties | Length: 483aa MW: 54900.9 Da PI: 9.3895 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.9 | 1.7e-13 | 37 | 106 | 12 | 85 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 ++ +++p+kf++++ggk s+t+ le+++g+++ v++ +k+ +++ + GW+ F +a++++e+D+++F ++ Brast02G235100.1.p 37 FRHGMIIPNKFMDHFGGK--ISRTIELESPDGNTYVVEV--SKNLSKTCPRHGWEAFLDAHHIEENDSLLFLFS 106 3567********888988..888****************..999999************************865 PP | |||||||
2 | B3 | 33.3 | 8.6e-11 | 230 | 311 | 16 | 99 |
EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE.E-SS.SEE..EEEEE-S CS B3 16 lvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk.ldgr.sefelvvkvfrk 99 lv+pk +a+eh +++s+t++l+ ++++W ++ +rk ++++ l+ +F ++n ++egD++vF+ ++g+ ++f+l+v+++r+ Brast02G235100.1.p 230 LVIPKGYAAEHF--PHKSQTVILQRcGKNKKWYPRFHIRKDGCAF-LR--LLGFLQDNLVQEGDICVFEpMKGTgRKFSLKVHLLRE 311 89*********7..446789***998999*******778887775.66..789****************555889999999999986 PP | |||||||
3 | B3 | 40.8 | 3.8e-13 | 396 | 478 | 17 | 99 |
E--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 17 vlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 +++k +a+++ +++++tl+l e+++ W+ ++ r ++ +++ ++GW++Fv++n+L+ D+++F+ +++ + +++v ++r+ Brast02G235100.1.p 396 TISKAYAAKYL--PARGQTLRLLRpERSKIWDAEMHPRIGDAKMLRGAGWRKFVHENRLQFQDICLFQQMKNeGRLTMMVYIIRH 478 68899998884..456779999996888*******778888889999*********************88887999999999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.45E-15 | 22 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-13 | 24 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.178 | 26 | 130 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.85E-15 | 27 | 103 | No hit | No description |
SMART | SM01019 | 0.0029 | 28 | 122 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.8E-12 | 38 | 105 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 6.583 | 215 | 312 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-11 | 215 | 310 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.15 | 218 | 312 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.35E-10 | 228 | 310 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.66E-10 | 230 | 310 | No hit | No description |
Pfam | PF02362 | 2.0E-9 | 230 | 311 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0074 | 388 | 479 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 7.26E-13 | 396 | 478 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.4E-12 | 396 | 479 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.76E-12 | 396 | 477 | No hit | No description |
Pfam | PF02362 | 4.3E-11 | 396 | 478 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.08 | 397 | 479 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 483 aa Download sequence Send to blast |
MSRLESQIQK SCDCCKRYVD HLEGKMKCFQ RHMTADFRHG MIIPNKFMDH FGGKISRTIE 60 LESPDGNTYV VEVSKNLSKT CPRHGWEAFL DAHHIEENDS LLFLFSCAGI KVTCNVQQIS 120 SDYVDVSNSS HADTTKSSGS KEFASCERVH SSHPRKTAKT PAKYSSYEDS GEDTEDIYSE 180 YESSFQLDDL QTPLGCDYVV CQRSALSAVH EEKVTRLLQD KDIRAEAPVL VIPKGYAAEH 240 FPHKSQTVIL QRCGKNKKWY PRFHIRKDGC AFLRLLGFLQ DNLVQEGDIC VFEPMKGTGR 300 KFSLKVHLLR ESIIGGSGPK TVSSPHGKTR VSPATPKRVS TTHGRARANV TPKTRVKKEL 360 EHGPVEPPYM LSAAACLTWE QKKKVERLVD AIQPETISKA YAAKYLPARG QTLRLLRPER 420 SKIWDAEMHP RIGDAKMLRG AGWRKFVHEN RLQFQDICLF QQMKNEGRLT MMVYIIRHKE 480 KR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast02G235100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010232555.1 | 0.0 | B3 domain-containing protein Os03g0620400 | ||||
Swissprot | Q851W5 | 1e-135 | Y3204_ORYSJ; B3 domain-containing protein Os03g0620400 | ||||
TrEMBL | A0A0Q3GTC9 | 0.0 | A0A0Q3GTC9_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G14530.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP585 | 31 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 5e-18 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast02G235100.1.p |
Publications ? help Back to Top | |||
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