PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G234600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 212aa    MW: 24445.5 Da    PI: 8.1337
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G234600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.82.5e-1067150590
                         -..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
                  B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                         +++ +v ++  lv+ k++a ++  +k+e  t++l+   +++ W  ++++r +++r+ l     +Fv++n+++egD+++F+ + + + +
  Brast02G234600.1.p  67 MKKTNVKQHPDLVIHKDYAIKNFPSKNE--TIMLKLpGKSKDWPCRFRVRLGGNRHHLY--LCNFVHDNRVREGDICLFQPMTKgNAR 150
                         56677888889***********755445..67777744669999999988888888888..88*****************55332443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-1353148IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.4E-1258154IPR015300DNA-binding pseudobarrel domain
CDDcd100174.01E-1061155No hitNo description
PfamPF023622.2E-866153IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MFSSFCNYLT SEDNPSEDEP VESDDLQMPS KDYVLNGRCN LTEAQEERID ELVQKIRPKI  60
PVLVVRMKKT NVKQHPDLVI HKDYAIKNFP SKNETIMLKL PGKSKDWPCR FRVRLGGNRH  120
HLYLCNFVHD NRVREGDICL FQPMTKGNAR SFTVTAHLLC KASLIIPLLI IPLLEEMTLL  180
IYQTTMVMIP KNHQEENYFL DLKGVAQGIF K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G234600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198707.12e-50B3 domain-containing protein Os03g0619600-like
TrEMBLA0A3B5Z4815e-53A0A3B5Z481_WHEAT; Uncharacterized protein
STRINGEMT181709e-52(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172