PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G234500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 676aa    MW: 76353.1 Da    PI: 8.651
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G234500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.51.6e-1521106899
                         -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                  B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                          d ++++ +v+p +f++++  + ++   ++le ++g++++v +  +k+++r+++++GW+ F +an++ ++ +++F++ g  +f ++v vf+
  Brast02G234500.1.p  21 MDKNSRHSMVIPERFVNHFTRQMPG--NIKLEAPNGNVYDVGV--TKHRNRTIFQSGWQTFIDANNIVQNNSLMFRYLG--CFYFKVAVFD 105
                         47788999********777666545..6***************..*******************************987..8988999998 PP

                         S CS
                  B3  99 k 99 
                         +
  Brast02G234500.1.p 106 S 106
                         6 PP
2B341.23e-134455291599
                         -EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                  B3  15 rlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                         +l++ k++a+ +  +  es  +tl+   ++++W  ++  +k  +++ l++ W++Fv +n+++egD+++F   +  ++ +++v+++r+
  Brast02G234500.1.p 445 CLIICKEYATVYFPS--ESASVTLQRpGKSKKWHPRFYKSKDASMHKLRGQWSDFVCDNRVEEGDICIFVPAKGgRRSTFTVHLLRA 529
                         4999*****999744..6678999995666*******66888888*************************66444777779998886 PP
3B355.11.4e-175986702297
                         H.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
                  B3  22 faeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                         fa+ + ++k    + +l + +g+ W  k+++r++  r+vl++GW++Fv++n+L++gD+++F+l+++ ++ +++v+++
  Brast02G234500.1.p 598 FAAVC-LPKG--EQTMLLQNTGKIWHTKMRVRNG-TRCVLGEGWSKFVSDNRLQVGDICLFELKKNrRKLTMMVHII 670
                         55444.3333..34777888*********75544.589**************************9889999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.39314107IPR003340B3 DNA binding domain
CDDcd100177.05E-1615105No hitNo description
Gene3DG3DSA:2.40.330.105.0E-1716109IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.19E-1916109IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.2E-617107IPR003340B3 DNA binding domain
PfamPF023628.7E-1421106IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-11221323IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-11222322IPR015300DNA-binding pseudobarrel domain
CDDcd100171.05E-9227323No hitNo description
SMARTSM010190.027229328IPR003340B3 DNA binding domain
PROSITE profilePS508636.978229326IPR003340B3 DNA binding domain
PfamPF023624.7E-8236322IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-18423530IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.19E-18424529IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0021430530IPR003340B3 DNA binding domain
CDDcd100173.94E-18430528No hitNo description
PROSITE profilePS5086310.856431530IPR003340B3 DNA binding domain
PfamPF023628.4E-12433529IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-20567671IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-20568674IPR015300DNA-binding pseudobarrel domain
CDDcd100173.28E-18573670No hitNo description
SMARTSM010191.7E-7575674IPR003340B3 DNA binding domain
PROSITE profilePS5086312.435575673IPR003340B3 DNA binding domain
PfamPF023621.6E-15595670IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MSNTCECCKK YGKAKRFVRR MDKNSRHSMV IPERFVNHFT RQMPGNIKLE APNGNVYDVG  60
VTKHRNRTIF QSGWQTFIDA NNIVQNNSLM FRYLGCFYFK VAVFDSSGCE KVVPCSRIES  120
IDQEPITSSV GVSSSSSYHN TQLSVSRSDG CHIGRRGNSA KREKTYAASS PSEDLSGEDN  180
PYEHDSSESD DHILSKPLYV LSVQCYVTEG QEAQIVALVD EIKPEMPLLV TLIRKPNVKP  240
YPDLVIPKDY ATAYFPHRSQ IITFQLAGQT KTWHCKFRAR PDGGRCNLYG CYFVRDNHLL  300
QGDLCLFQPM MNGEGTTFTV MIHVLPKASI DHPSDIIPSS ASTKMTSEVC VKEEQSDSSR  360
KPDGCESGSS SHSRNITNKT VISSPAEESD YVCTPPGHDY VLSRWSYLAE AQKEKVVMLI  420
RKVQPRSRVF VAIMRKSNVQ PLYPCLIICK EYATVYFPSE SASVTLQRPG KSKKWHPRFY  480
KSKDASMHKL RGQWSDFVCD NRVEEGDICI FVPAKGGRRS TFTVHLLRAE NDMHASPSDE  540
QEKPYILSQM SSLSPLQQSL VEDKMQAIQS EAPLYVAIMN NTSVGVNQRY TLEFGAEFAA  600
VCLPKGEQTM LLQNTGKIWH TKMRVRNGTR CVLGEGWSKF VSDNRLQVGD ICLFELKKNR  660
RKLTMMVHII FSHQC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1655662LKKNRRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G234500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232591.10.0B3 domain-containing protein Os03g0619600 isoform X2
TrEMBLA0A0Q3KSW10.0A0A0Q3KSW1_BRADI; Uncharacterized protein
STRINGBRADI1G14560.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.18e-16B3 family protein