PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast02G232100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 213aa MW: 22070 Da PI: 8.7715 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.7 | 8.8e-05 | 66 | 88 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ Cgk F++ L H +H Brast02G232100.1.p 66 YRCSVCGKAFPSYQALGGHKASH 88 9***********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.32E-9 | 65 | 88 | No hit | No description |
SMART | SM00355 | 0.0051 | 66 | 88 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 9.0E-4 | 66 | 88 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 1.1E-13 | 66 | 90 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.866 | 66 | 93 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 68 | 88 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.32E-9 | 124 | 151 | No hit | No description |
Pfam | PF13912 | 2.7E-13 | 128 | 153 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.22 | 129 | 151 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.533 | 129 | 156 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 131 | 151 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MAVEAASEHG GLQHCAEGWG KRKRTRRPQQ PAPTEEEHLA LSLLMLARGH RDGTSSSLQA 60 RLGQQYRCSV CGKAFPSYQA LGGHKASHRP KASPPSGADE SAADNTARAA SPPPAASSSA 120 SSGAAGKAHE CSVCKKAFPT GQALGGHKRC HYEGPPLGLG GSVASRGFDL NLPALPDIIV 180 NEPRCCVPAA AEEEEVLSPM ALIKKPRLMI PA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Potential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00399 | DAP | Transfer from AT3G49930 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast02G232100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003562286.1 | 1e-93 | zinc finger protein 1 | ||||
Swissprot | Q42430 | 9e-40 | ZFP1_WHEAT; Zinc finger protein 1 | ||||
TrEMBL | I1GQB7 | 2e-92 | I1GQB7_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G14750.1 | 4e-93 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1022 | 36 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49930.1 | 8e-38 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast02G232100.1.p |