PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast02G227200.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

GRAS

Protein Properties

Length: 708aa MW: 80897.5 Da PI: 7.6026

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast02G227200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	341.9	1.1e-104	330	700	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 ++lL++cAeavs ++ a+++L+++++++sp gd qRla+y++ L+ rla++vs+++++ + + + +++ l+ +l + v+P+l+ Brast02G227200.1.p 330 TTLLINCAEAVSFNNGIVASEILKKIRQHSSPCGDDSQRLAFYLADCLEIRLAGNVSQISQKTITVPID---VAHILKLIHLCYTVCPYLR 417 689*************************************************999999877777776...9999999999***** PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181 s+ + N++Il+ +g+ rvHiiDf+i G+QWp+L++++a+R++gpp+lRiTgv+ p++g e+ ++t rL +A+ ++vp+e+++ Brast02G227200.1.p 418 ASYYLSNKTILDVSKGKPRVHIIDFGICFGFQWPSLFEQFANREGGPPKLRITGVEIPQPGfrPDEMNKNTWLRLVAYANMFKVPLEYRL- 507 *********************************************************988888899999**************9. PP GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272 +++++e++++e+++++++E+l+Vn++ ++++l de+ s++s+r++vL++++ ++P+v+++ + +++++ Fl rf ea+++y+alfd l+ Brast02G227200.1.p 508 ISSKWEAISIEDFNIHKDEVLVVNCINRMKNLGDETISINSARNRVLNTIRMMKPTVFIHGVVNGSYSTPFFLPRFKEAMYHYTALFDILD 598 7************************************************************************************** PP GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363 + pr++++r+++E++l + +i nv+aceg+er+er e+++kW+ r +a ++++pl+ ++kq ++++r+++ + y v+ee+++lvlgWk Brast02G227200.1.p 599 RTTPRDNKTRMMLEAHLYKFAILNVIACEGSERTERPESYKKWKVRSLRARLEQLPLNPAIVKQTQCMVRQIYHKDYFVDEEDQCLVLGWK 689 *********************************************************************888*********** PP GRAS 364 drpLvsvSaWr 374 +r L+++S W+ Brast02G227200.1.p 690 GRILYAISTWK 700 ********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	57.66	303	680	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.7E-102	330	700	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 708 aa Download sequence Send to blast
MANRPECHDN SSQEVIQPTT ISNDLELLLH PQSSMCYYPP QSIVSNKDSH VAWSTPYSCI 60 YSPQSYIVSS NVRSDWCRIT AADYPEHTRI NSDTTLSYIE QMLMQDTDDK VRSHHGETAI 120 RTMEEPFYKL LGQKYPVLPE LLPLCGCDRM KNLNGNISNL NEQSCSTCSV NISSSNYHSN 180 ENTQDFEAPW TLSAIVGEAF TQDTERMEIG LNINGLAISR ANHPLQISAQ DTMRHASFEV 240 RGRKGYPGIE GFDLLEERSN KKFAIFSDEP IRNEMFDEVL LCSENKLVGE GIILQGTMPY 300 KWPQKNQGRK SVLQKTRGRT QQKKEVVDLT TLLINCAEAV SFNNGIVASE ILKKIRQHSS 360 PCGDDSQRLA FYLADCLEIR LAGNVSQISQ KTITVPIDVA HILKLIHLCY TVCPYLRASY 420 YLSNKTILDV SKGKPRVHII DFGICFGFQW PSLFEQFANR EGGPPKLRIT GVEIPQPGFR 480 PDEMNKNTWL RLVAYANMFK VPLEYRLISS KWEAISIEDF NIHKDEVLVV NCINRMKNLG 540 DETISINSAR NRVLNTIRMM KPTVFIHGVV NGSYSTPFFL PRFKEAMYHY TALFDILDRT 600 TPRDNKTRMM LEAHLYKFAI LNVIACEGSE RTERPESYKK WKVRSLRARL EQLPLNPAIV 660 KQTQCMVRQI YHKDYFVDEE DQCLVLGWKG RILYAISTWK PKESNDG*

Sequence ? help Back to Top

Protein Sequence Length: 708 aa Download sequence Send to blast

MANRPECHDN SSQEVIQPTT ISNDLELLLH PQSSMCYYPP QSIVSNKDSH VAWSTPYSCI  60
YSPQSYIVSS NVRSDWCRIT AADYPEHTRI NSDTTLSYIE QMLMQDTDDK VRSHHGETAI  120
RTMEEPFYKL LGQKYPVLPE LLPLCGCDRM KNLNGNISNL NEQSCSTCSV NISSSNYHSN  180
ENTQDFEAPW TLSAIVGEAF TQDTERMEIG LNINGLAISR ANHPLQISAQ DTMRHASFEV  240
RGRKGYPGIE GFDLLEERSN KKFAIFSDEP IRNEMFDEVL LCSENKLVGE GIILQGTMPY  300
KWPQKNQGRK SVLQKTRGRT QQKKEVVDLT TLLINCAEAV SFNNGIVASE ILKKIRQHSS  360
PCGDDSQRLA FYLADCLEIR LAGNVSQISQ KTITVPIDVA HILKLIHLCY TVCPYLRASY  420
YLSNKTILDV SKGKPRVHII DFGICFGFQW PSLFEQFANR EGGPPKLRIT GVEIPQPGFR  480
PDEMNKNTWL RLVAYANMFK VPLEYRLISS KWEAISIEDF NIHKDEVLVV NCINRMKNLG  540
DETISINSAR NRVLNTIRMM KPTVFIHGVV NGSYSTPFFL PRFKEAMYHY TALFDILDRT  600
TPRDNKTRMM LEAHLYKFAI LNVIACEGSE RTERPESYKK WKVRSLRARL EQLPLNPAIV  660
KQTQCMVRQI YHKDYFVDEE DQCLVLGWKG RILYAISTWK PKESNDG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-43	333	700	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast02G227200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024313379.1	0.0	scarecrow-like protein 9
TrEMBL	A0A0Q3GTT0	0.0	A0A0Q3GTT0_BRADI; Uncharacterized protein
STRING	BRADI1G15123.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11788	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-135	GRAS family protein

Link Out ? help Back to Top
Phytozome	Brast02G227200.1.p