PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G220900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 480aa    MW: 50348.5 Da    PI: 4.9267
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G220900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.11.1e-144895148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+ Ed  lv+ v  +G g+W+++ r  g+ R++k+c++rw ++l
  Brast02G220900.1.p 48 KGPWTAAEDTMLVNHVLSHGEGNWNAVQRVSGLLRCGKSCRLRWTNHL 95
                        79******************************99***********996 PP
2Myb_DNA-binding50.74.3e-16101144146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         +g+++++E++l++++++qlG++ W++ a++++ gRt++++k++w++
  Brast02G220900.1.p 101 KGSFSPQEELLIAQLHAQLGNK-WARMASHLP-GRTDNEIKNYWNT 144
                         799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.6384395IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-194498IPR009057Homeodomain-like
SuperFamilySSF466895.08E-2846142IPR009057Homeodomain-like
SMARTSM007172.9E-124797IPR001005SANT/Myb domain
PfamPF002494.5E-124895IPR001005SANT/Myb domain
CDDcd001672.01E-95095No hitNo description
PROSITE profilePS5129422.33296150IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-2499149IPR009057Homeodomain-like
SMARTSM007173.8E-15100148IPR001005SANT/Myb domain
PfamPF002494.7E-15101144IPR001005SANT/Myb domain
CDDcd001671.06E-10103144No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MDQGKSSDMV QAPTSPEEEN AAAAGGADSS TDDEEAPQMD NAAAALKKGP WTAAEDTMLV  60
NHVLSHGEGN WNAVQRVSGL LRCGKSCRLR WTNHLRPNLK KGSFSPQEEL LIAQLHAQLG  120
NKWARMASHL PGRTDNEIKN YWNTRCKRRQ RAGLPVYPPE VQLQLATAKR CRYDDFSPLQ  180
PSSSPQESGG SGTNVLLSLG VAADAASAAG YTSARPAALD LAMGSRPVQP FLNAPTPLSA  240
PSTPWATTPP FQRNAQYLKL SSSHPHSSPV SPTGAPAELS LGGYGGLPGA RLFPPLSPPP  300
GAARVELPSS QLRPAMQLQP FPAPAGRQQA PSATANANAN ANAAGLGGGV SQDQQNGTSF  360
EEILQELNDA IKSPANGSSG DANAQQQQEE DGVSGGNESV DELKHDLDTL FGFGLMTAPA  420
TPFPTAEPDA LAVVAANNSG SISQHSSDEQ DHSIVDLGSS DQDWGLDGTF QWNSMSRIC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-284614925127MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G220900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0425371e-124BT042537.1 Zea mays full-length cDNA clone ZM_BFb0325G13 mRNA, complete cds.
GenBankKJ7275321e-124KJ727532.1 Zea mays clone pUT5392 MYB transcription factor (MYB129) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014751997.10.0transcription factor MYB33
TrEMBLA0A2K2DJN20.0A0A2K2DJN2_BRADI; Uncharacterized protein
STRINGMLOC_6041.11e-139(Hordeum vulgare)
STRINGTRIUR3_20797-P11e-139(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74203750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.11e-64myb domain protein 33