PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast02G217500.2.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

HB-other

Protein Properties

Length: 1280aa MW: 144668 Da PI: 8.8182

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast02G217500.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	40.8	3.8e-13	169	220	6	57
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + ++ q++ Le+++ + +yp+ +++ e A+++gL +qV++WF+ rR ke++ Brast02G217500.2.p 169 KKSPLQIQMLERFYSEVQYPKPDDMIEYASSVGLAYSQVRIWFKERRRKERR 220 66899*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	13.847	161	221	IPR001356	Homeobox domain
SMART	SM00389	3.4E-14	163	225	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.61E-12	167	227	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.3E-14	168	229	IPR009057	Homeodomain-like
CDD	cd00086	2.79E-7	168	211	No hit	No description
Pfam	PF00046	1.8E-10	169	220	IPR001356	Homeobox domain
SMART	SM00571	3.2E-4	498	557	IPR018501	DDT domain
PROSITE profile	PS50827	10.06	498	557	IPR018501	DDT domain
Pfam	PF02791	6.4E-7	500	552	IPR018501	DDT domain
Pfam	PF15612	2.3E-5	777	808	IPR028942	WHIM1 domain
Pfam	PF15613	1.2E-9	900	971	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1280 aa Download sequence Send to blast
MRPSSAMTHL CARAYNSCVV RMWIASRTLR VEETYLEGEV SDWKTTSLTQ TITDSHSNPD 60 LNPSRHPFRR LAGVAGSQRP RARVVSARRL LLTANARRPQ STSRRRRDCS RHPLQARPSS 120 RAWHSQLTRP SRRWRWQSAR QRQLKDGTNW NIFFVTVVLV QMMTNAGTKK SPLQIQMLER 180 FYSEVQYPKP DDMIEYASSV GLAYSQVRIW FKERRRKERR QMEAAGAHME TQVSARSNGP 240 RSMSLVGEKH ALRPQVLYPK DYILAKVFRK DGPSLGSEFD PLPKSAHGHV RDTTEYHSDQ 300 DQRVVKKRKI VECTDQGFTL PCQSNGPVRK HGMGKGLMTV WHAMYSKNAE VQDVSNFIDE 360 TGCLRSLRPF DDSDGKLIQK KISPRKKVDK KSRPPPSKRK VPRGRVTVLK EHPPMECHLS 420 VDESESSELQ TEQATLVDDE ELELSELQAG PNPLRCSAHL SSSGRHGCPL CKDLLARFPP 480 PSVKMKQPFS TKPWDSSPEM VKKLFQVVRF VYTHFGSMDV HPFTFDEFAQ AFHDKESSLL 540 GKVHVSLLKL LLLSTKRDSG DVFVPRSSKD SRFISFLNFV REQEFDVNFW IKSLNSLTWV 600 EILRQVLVAS GFGSDHHMLN RNFFIKEKNQ MVKYGLRPRT LKGELFALLS KKGIRGLKVS 660 ELAKSPQIVD LNLSGASEVE QLIFSTLSSD ITLFEKIASS AYRLRVDPRI KGKENPKSDT 720 EDSGTVDDDE DASSSGEEYD GPEELSFSEH ECRIVRRKQK NGHKTMNKCS EIDESYSGER 780 WLLGLMEGEY SDLSIDEKLD CLVALMDVVS GAGSVPRLEE PQSVLSNIQR AQSHASGGKI 840 KKLRRTIYQS SDEYLNRPGS SHSFDTSIQG QSGNRRSQDY ISESAANESS TGFAHQPQIV 900 LLGSDRRYNN YWLFLGPCTA DDPGHRRVYF ESSEDGHWEV LDSPQELLSL LSLLDIRGRR 960 EAHLLASMKK RQACLFEGMK KHLEDGNAVG ISASSDSSRS ETSSGSRASP KLGSGDGASP 1020 LSDIDNASVP TYLADNLLSA SSAIVIEAGR RGDEKILKWE RLQALDKWIW TSFYSSLIAV 1080 KCGKRSFKES LVHCESCHDL YWRDEKHCRI CHSTFEVGFD LEERYAIHVA TCREPEDLYD 1140 VPNHKVLSSQ LQALKAAIHA IEACMPEAAF AGLWMKSSHN LWVRRLRRTS SLPELLQVLV 1200 DFVGAMDEDW LYQSSSTVSF CSYLDNITVY FQTMPQTTSA VALWVVKLDA LIAPYLVQTD 1260 PDRALAEGST KTRTQACVR*

Sequence ? help Back to Top

Protein Sequence Length: 1280 aa Download sequence Send to blast

MRPSSAMTHL CARAYNSCVV RMWIASRTLR VEETYLEGEV SDWKTTSLTQ TITDSHSNPD  60
LNPSRHPFRR LAGVAGSQRP RARVVSARRL LLTANARRPQ STSRRRRDCS RHPLQARPSS  120
RAWHSQLTRP SRRWRWQSAR QRQLKDGTNW NIFFVTVVLV QMMTNAGTKK SPLQIQMLER  180
FYSEVQYPKP DDMIEYASSV GLAYSQVRIW FKERRRKERR QMEAAGAHME TQVSARSNGP  240
RSMSLVGEKH ALRPQVLYPK DYILAKVFRK DGPSLGSEFD PLPKSAHGHV RDTTEYHSDQ  300
DQRVVKKRKI VECTDQGFTL PCQSNGPVRK HGMGKGLMTV WHAMYSKNAE VQDVSNFIDE  360
TGCLRSLRPF DDSDGKLIQK KISPRKKVDK KSRPPPSKRK VPRGRVTVLK EHPPMECHLS  420
VDESESSELQ TEQATLVDDE ELELSELQAG PNPLRCSAHL SSSGRHGCPL CKDLLARFPP  480
PSVKMKQPFS TKPWDSSPEM VKKLFQVVRF VYTHFGSMDV HPFTFDEFAQ AFHDKESSLL  540
GKVHVSLLKL LLLSTKRDSG DVFVPRSSKD SRFISFLNFV REQEFDVNFW IKSLNSLTWV  600
EILRQVLVAS GFGSDHHMLN RNFFIKEKNQ MVKYGLRPRT LKGELFALLS KKGIRGLKVS  660
ELAKSPQIVD LNLSGASEVE QLIFSTLSSD ITLFEKIASS AYRLRVDPRI KGKENPKSDT  720
EDSGTVDDDE DASSSGEEYD GPEELSFSEH ECRIVRRKQK NGHKTMNKCS EIDESYSGER  780
WLLGLMEGEY SDLSIDEKLD CLVALMDVVS GAGSVPRLEE PQSVLSNIQR AQSHASGGKI  840
KKLRRTIYQS SDEYLNRPGS SHSFDTSIQG QSGNRRSQDY ISESAANESS TGFAHQPQIV  900
LLGSDRRYNN YWLFLGPCTA DDPGHRRVYF ESSEDGHWEV LDSPQELLSL LSLLDIRGRR  960
EAHLLASMKK RQACLFEGMK KHLEDGNAVG ISASSDSSRS ETSSGSRASP KLGSGDGASP  1020
LSDIDNASVP TYLADNLLSA SSAIVIEAGR RGDEKILKWE RLQALDKWIW TSFYSSLIAV  1080
KCGKRSFKES LVHCESCHDL YWRDEKHCRI CHSTFEVGFD LEERYAIHVA TCREPEDLYD  1140
VPNHKVLSSQ LQALKAAIHA IEACMPEAAF AGLWMKSSHN LWVRRLRRTS SLPELLQVLV  1200
DFVGAMDEDW LYQSSSTVSF CSYLDNITVY FQTMPQTTSA VALWVVKLDA LIAPYLVQTD  1260
PDRALAEGST KTRTQACVR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast02G217500.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK373981	0.0	AK373981.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3049P02.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014758747.1	0.0	homeobox-DDT domain protein RLT3 isoform X2
TrEMBL	A0A0Q3IIR9	0.0	A0A0Q3IIR9_BRADI; Uncharacterized protein
STRING	MLOC_6327.3	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	0.0	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Brast02G217500.2.p