PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast02G217500.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

HB-other

Protein Properties

Length: 1282aa MW: 144838 Da PI: 8.8182

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast02G217500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	40.8	3.8e-13	169	220	6	57
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + ++ q++ Le+++ + +yp+ +++ e A+++gL +qV++WF+ rR ke++ Brast02G217500.1.p 169 KKSPLQIQMLERFYSEVQYPKPDDMIEYASSVGLAYSQVRIWFKERRRKERR 220 66899*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	13.847	161	221	IPR001356	Homeobox domain
SMART	SM00389	3.4E-14	163	225	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.61E-12	167	227	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.3E-14	168	229	IPR009057	Homeodomain-like
CDD	cd00086	2.60E-7	168	211	No hit	No description
Pfam	PF00046	1.8E-10	169	220	IPR001356	Homeobox domain
SMART	SM00571	3.2E-4	500	559	IPR018501	DDT domain
PROSITE profile	PS50827	10.06	500	559	IPR018501	DDT domain
Pfam	PF02791	6.4E-7	502	554	IPR018501	DDT domain
Pfam	PF15612	2.3E-5	779	810	IPR028942	WHIM1 domain
Pfam	PF15613	1.2E-9	902	973	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1282 aa Download sequence Send to blast
MRPSSAMTHL CARAYNSCVV RMWIASRTLR VEETYLEGEV SDWKTTSLTQ TITDSHSNPD 60 LNPSRHPFRR LAGVAGSQRP RARVVSARRL LLTANARRPQ STSRRRRDCS RHPLQARPSS 120 RAWHSQLTRP SRRWRWQSAR QRQLKDGTNW NIFFVTVVLV QMMTNAGTKK SPLQIQMLER 180 FYSEVQYPKP DDMIEYASSV GLAYSQVRIW FKERRRKERR QMEAAGAHME TQVSARSNGP 240 RSMSLVGEKH ALRPQVLYPK DYILAKVFRK DGPSLGSEFD PLPKSAHGHV RVADTTEYHS 300 DQDQRVVKKR KIVECTDQGF TLPCQSNGPV RKHGMGKGLM TVWHAMYSKN AEVQDVSNFI 360 DETGCLRSLR PFDDSDGKLI QKKISPRKKV DKKSRPPPSK RKVPRGRVTV LKEHPPMECH 420 LSVDESESSE LQTEQATLVD DEELELSELQ AGPNPLRCSA HLSSSGRHGC PLCKDLLARF 480 PPPSVKMKQP FSTKPWDSSP EMVKKLFQVV RFVYTHFGSM DVHPFTFDEF AQAFHDKESS 540 LLGKVHVSLL KLLLLSTKRD SGDVFVPRSS KDSRFISFLN FVREQEFDVN FWIKSLNSLT 600 WVEILRQVLV ASGFGSDHHM LNRNFFIKEK NQMVKYGLRP RTLKGELFAL LSKKGIRGLK 660 VSELAKSPQI VDLNLSGASE VEQLIFSTLS SDITLFEKIA SSAYRLRVDP RIKGKENPKS 720 DTEDSGTVDD DEDASSSGEE YDGPEELSFS EHECRIVRRK QKNGHKTMNK CSEIDESYSG 780 ERWLLGLMEG EYSDLSIDEK LDCLVALMDV VSGAGSVPRL EEPQSVLSNI QRAQSHASGG 840 KIKKLRRTIY QSSDEYLNRP GSSHSFDTSI QGQSGNRRSQ DYISESAANE SSTGFAHQPQ 900 IVLLGSDRRY NNYWLFLGPC TADDPGHRRV YFESSEDGHW EVLDSPQELL SLLSLLDIRG 960 RREAHLLASM KKRQACLFEG MKKHLEDGNA VGISASSDSS RSETSSGSRA SPKLGSGDGA 1020 SPLSDIDNAS VPTYLADNLL SASSAIVIEA GRRGDEKILK WERLQALDKW IWTSFYSSLI 1080 AVKCGKRSFK ESLVHCESCH DLYWRDEKHC RICHSTFEVG FDLEERYAIH VATCREPEDL 1140 YDVPNHKVLS SQLQALKAAI HAIEACMPEA AFAGLWMKSS HNLWVRRLRR TSSLPELLQV 1200 LVDFVGAMDE DWLYQSSSTV SFCSYLDNIT VYFQTMPQTT SAVALWVVKL DALIAPYLVQ 1260 TDPDRALAEG STKTRTQACV R*

Sequence ? help Back to Top

Protein Sequence Length: 1282 aa Download sequence Send to blast

MRPSSAMTHL CARAYNSCVV RMWIASRTLR VEETYLEGEV SDWKTTSLTQ TITDSHSNPD  60
LNPSRHPFRR LAGVAGSQRP RARVVSARRL LLTANARRPQ STSRRRRDCS RHPLQARPSS  120
RAWHSQLTRP SRRWRWQSAR QRQLKDGTNW NIFFVTVVLV QMMTNAGTKK SPLQIQMLER  180
FYSEVQYPKP DDMIEYASSV GLAYSQVRIW FKERRRKERR QMEAAGAHME TQVSARSNGP  240
RSMSLVGEKH ALRPQVLYPK DYILAKVFRK DGPSLGSEFD PLPKSAHGHV RVADTTEYHS  300
DQDQRVVKKR KIVECTDQGF TLPCQSNGPV RKHGMGKGLM TVWHAMYSKN AEVQDVSNFI  360
DETGCLRSLR PFDDSDGKLI QKKISPRKKV DKKSRPPPSK RKVPRGRVTV LKEHPPMECH  420
LSVDESESSE LQTEQATLVD DEELELSELQ AGPNPLRCSA HLSSSGRHGC PLCKDLLARF  480
PPPSVKMKQP FSTKPWDSSP EMVKKLFQVV RFVYTHFGSM DVHPFTFDEF AQAFHDKESS  540
LLGKVHVSLL KLLLLSTKRD SGDVFVPRSS KDSRFISFLN FVREQEFDVN FWIKSLNSLT  600
WVEILRQVLV ASGFGSDHHM LNRNFFIKEK NQMVKYGLRP RTLKGELFAL LSKKGIRGLK  660
VSELAKSPQI VDLNLSGASE VEQLIFSTLS SDITLFEKIA SSAYRLRVDP RIKGKENPKS  720
DTEDSGTVDD DEDASSSGEE YDGPEELSFS EHECRIVRRK QKNGHKTMNK CSEIDESYSG  780
ERWLLGLMEG EYSDLSIDEK LDCLVALMDV VSGAGSVPRL EEPQSVLSNI QRAQSHASGG  840
KIKKLRRTIY QSSDEYLNRP GSSHSFDTSI QGQSGNRRSQ DYISESAANE SSTGFAHQPQ  900
IVLLGSDRRY NNYWLFLGPC TADDPGHRRV YFESSEDGHW EVLDSPQELL SLLSLLDIRG  960
RREAHLLASM KKRQACLFEG MKKHLEDGNA VGISASSDSS RSETSSGSRA SPKLGSGDGA  1020
SPLSDIDNAS VPTYLADNLL SASSAIVIEA GRRGDEKILK WERLQALDKW IWTSFYSSLI  1080
AVKCGKRSFK ESLVHCESCH DLYWRDEKHC RICHSTFEVG FDLEERYAIH VATCREPEDL  1140
YDVPNHKVLS SQLQALKAAI HAIEACMPEA AFAGLWMKSS HNLWVRRLRR TSSLPELLQV  1200
LVDFVGAMDE DWLYQSSSTV SFCSYLDNIT VYFQTMPQTT SAVALWVVKL DALIAPYLVQ  1260
TDPDRALAEG STKTRTQACV R*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast02G217500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK373981	0.0	AK373981.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3049P02.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010237104.1	0.0	homeobox-DDT domain protein RLT3 isoform X1
TrEMBL	A0A0Q3IIR9	0.0	A0A0Q3IIR9_BRADI; Uncharacterized protein
STRING	MLOC_6327.3	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4556	33	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	0.0	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Brast02G217500.1.p