PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G210400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRAS
Protein Properties Length: 515aa    MW: 54800.8 Da    PI: 6.742
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G210400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS190.31.3e-581375102374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn........sseelaalkl 83 
                         ++lL  cA av++++l+++q+l   l elas +gd+++Rlaay ++AL+ rl    +   ++a+++ +    +         + +l+   +
  Brast02G210400.1.p 137 EQLLSPCAVAVEARNLSRVQHLFYVLGELASLSGDANHRLAAYGLRALSLRLPAaAGAAAAAAVRVPAMMG-EcpsptfagAEPRLFR--A 224
                         68999***********************************************9933444444443333332.2455445432222222..1 PP

                GRAS  84 ....fsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg....skeeleetge 163
                             f+evsP++ + + +aN aI + ++   + +H +D ++s+G+QWp+Ll++L+  p  + p+s+R+T+v++++       +      + 
  Brast02G210400.1.p 225 slirFHEVSPWFALPNALANAAIAQQAQAPgRPLHLVDVGVSHGVQWPTLLESLTRLPagRAPHSVRLTVVDAAARAppfsASPPGYDFAP 315
                         3479*********************999996779*********************999655577*********88889998888899999* PP

                GRAS 164 rLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvl.qlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nses 252
                          L ++A+++++++++    a +l+d+   +++  ++Eal+V +   +l ++      +++er++vL+ v++l+P++vv++e ++   +s+ 
  Brast02G210400.1.p 316 HLLRYAKSINLELRIAR--AASLDDI---QIQGGQEEALVVVCLQfRLGHV------TPEERTDVLRKVRDLKPDLVVLSELDVVVgGSSG 395
                         **************997..5667777...7788889999888776044444......3556889*******************99989999 PP

                GRAS 253 Flerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                          + +f+  le  + +++s++a +   + e+r+ +E+e  ++++  + + eg+         e Wrer+++aGF+++p++ +a+++a++llr
  Brast02G210400.1.p 396 AAGEFSARLELLWRFLESTSAAFKGRDgEDRRLLEAEAGAPAAITAASGEGR---------EAWRERMRAAGFQEAPFGGEAVESARSLLR 477
                         9******************666655554999999999666665555555555.........49**************************** PP

                GRAS 343 kvksdgyrve..eesgslvlgWkdrpLvsvSaWr 374
                         k++  g+++      +++ l Wk++p+ ++S Wr
  Brast02G210400.1.p 478 KYD-SGWEMApgTGTAAVALRWKGQPVSFCSLWR 510
                         ***.566666225566667**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098531.901110489IPR005202Transcription factor GRAS
PfamPF035144.4E-56137510IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MEAMNYHEQD EQELTGVTAI NDGGQLDWLE ESISLLSADG DLSGSYGWWC DPVPAARQDD  60
IGIVVAQTLS PPAAPDPPTS IASPAPSSKK RKSPASGSGG HNSHSGQRRR AEQERERPGG  120
GKKSGSSKDC RDARWAEQLL SPCAVAVEAR NLSRVQHLFY VLGELASLSG DANHRLAAYG  180
LRALSLRLPA AAGAAAAAAV RVPAMMGECP SPTFAGAEPR LFRASLIRFH EVSPWFALPN  240
ALANAAIAQQ AQAPGRPLHL VDVGVSHGVQ WPTLLESLTR LPAGRAPHSV RLTVVDAAAR  300
APPFSASPPG YDFAPHLLRY AKSINLELRI ARAASLDDIQ IQGGQEEALV VVCLQFRLGH  360
VTPEERTDVL RKVRDLKPDL VVLSELDVVV GGSSGAAGEF SARLELLWRF LESTSAAFKG  420
RDGEDRRLLE AEAGAPAAIT AASGEGREAW RERMRAAGFQ EAPFGGEAVE SARSLLRKYD  480
SGWEMAPGTG TAAVALRWKG QPVSFCSLWR PAPP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B4e-3113251283475Protein SHORT-ROOT
5b3h_B2e-3113251229421Protein SHORT-ROOT
5b3h_E2e-3113251229421Protein SHORT-ROOT
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G210400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014751807.10.0nodulation-signaling pathway 1 protein
TrEMBLA0A0Q3HFK90.0A0A0Q3HFK9_BRADI; Uncharacterized protein
STRINGBRADI1G60140.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61352854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-79GRAS family protein