PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Brast02G204800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 207aa MW: 24265.1 Da PI: 7.8137 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 44.6 | 2.6e-14 | 112 | 198 | 5 | 99 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ++++++ ++++l +p +f +eh +e + ++l d + +++ + r + ++ l kGWkeF+ +++L +gD +vF+l+++ ++v Brast02G204800.1.p 112 FVRPMTQNLSNLHIPSQFSTEHL--PEHDARISLVDDEEDEYRTFY--RAQTSS--LNKGWKEFAVDHELVDGDCLVFQLIKKAF--FKVY 194 56677888899***********4..335568***************..555544..************************99555..5999 PP EE-S CS B3 96 vfrk 99 +fr+ Brast02G204800.1.p 195 IFRA 198 9997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.71E-19 | 105 | 199 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.3E-19 | 106 | 199 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.857 | 108 | 199 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.45E-19 | 110 | 197 | No hit | No description |
Pfam | PF02362 | 6.2E-12 | 112 | 198 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.7E-15 | 112 | 199 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 207 aa Download sequence Send to blast |
MAEVNSYEEQ RRRQVEENKR KLEELRLHHL SAAVREAATK PKQKRKAPAQ QEAGKDAPRR 60 RSDRIANIPE RPNYRDKAMK SRKQKELKPD HAYAITKAEE LQDELGSDYP TFVRPMTQNL 120 SNLHIPSQFS TEHLPEHDAR ISLVDDEEDE YRTFYRAQTS SLNKGWKEFA VDHELVDGDC 180 LVFQLIKKAF FKVYIFRASS YYEDDH* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Brast02G204800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010228540.2 | 1e-133 | B3 domain-containing protein Os06g0194400 | ||||
Refseq | XP_014752375.2 | 1e-133 | B3 domain-containing protein Os06g0194400 | ||||
Swissprot | Q69V36 | 1e-76 | Y6944_ORYSJ; B3 domain-containing protein Os06g0194400 | ||||
TrEMBL | A0A0Q3KAF8 | 1e-133 | A0A0Q3KAF8_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G60530.1 | 1e-117 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1756 | 38 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G42700.1 | 8e-33 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Brast02G204800.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|