PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G200900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CAMTA
Protein Properties Length: 1020aa    MW: 114449 Da    PI: 6.0973
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G200900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1172.27.3e-54211362117
                CG-1   2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 
                         l+ ++rwl+++ei+ iL n++ ++++ e+++ p sgsl+L++rk++ryfrkDG++w+kkkdgkt++E+hekLK g+++vl+cyYah+een+
  Brast02G200900.1.p  21 LDARSRWLRPTEICGILSNYKLFSIAPEPPNMPLSGSLFLFDRKILRYFRKDGHNWRKKKDGKTIKEAHEKLKAGSIDVLHCYYAHGEENE 111
                         66799************************************************************************************** PP

                CG-1  93 tfqrrcywlLeeelekivlvhylev 117
                         +fqrr+ywlLee++++ivlvhyle 
  Brast02G200900.1.p 112 NFQRRTYWLLEEDFTHIVLVHYLEI 136
                         **********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143778.08716142IPR005559CG-1 DNA-binding domain
SMARTSM010765.1E-7219137IPR005559CG-1 DNA-binding domain
PfamPF038595.8E-4823135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.103.5E-9434523IPR013783Immunoglobulin-like fold
CDDcd001020.00285435523No hitNo description
PfamPF018332.8E-7436519IPR002909IPT domain
SuperFamilySSF812967.78E-19436522IPR014756Immunoglobulin E-set
SuperFamilySSF484034.82E-16614729IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.1E-17625730IPR020683Ankyrin repeat-containing domain
CDDcd002044.05E-13629727No hitNo description
PROSITE profilePS5029717.635635729IPR020683Ankyrin repeat-containing domain
PfamPF127967.4E-7641730IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.164668700IPR002110Ankyrin repeat
SMARTSM002480.49668700IPR002110Ankyrin repeat
SMARTSM00248360707736IPR002110Ankyrin repeat
SuperFamilySSF525402.92E-7838893IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000151.3842864IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.096843872IPR000048IQ motif, EF-hand binding site
PfamPF006120.075844863IPR000048IQ motif, EF-hand binding site
SMARTSM000150.05865887IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.231866890IPR000048IQ motif, EF-hand binding site
PfamPF006120.0015868887IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1020 aa     Download sequence    Send to blast
MAEARKFLMP NQPPDISQML LDARSRWLRP TEICGILSNY KLFSIAPEPP NMPLSGSLFL  60
FDRKILRYFR KDGHNWRKKK DGKTIKEAHE KLKAGSIDVL HCYYAHGEEN ENFQRRTYWL  120
LEEDFTHIVL VHYLEIQGGK QSYNRVKDET MLGLNADSPS CSNSITSQNQ VAAESPISGQ  180
MSEYEDAESD NFRASSRYYP LTEVQQPLDG VVMDKMLYSS ASTIGSSQGC HRELLPRTAN  240
LDNHSFARYD IDRLFDDSTG VRGISRTLFD TVPFEEPFSN YPAGSTEPTL HSSFATIEAS  300
SLEDNSCLET YISEALYTNN LSQKEADALS FAGMASSEMN NNRYTEGSIK HTLSKQSSLD  360
LFKLECTGLK KHDSFSRWMS KELPEVVDLD IKSNSDAFWS SIETVNVADG SSMPTNEQLD  420
AYAVNPSLSQ DQLFSILDVS PSCAYIDEKT KVSVTGTFLA NKEHMEDCKW SCMFGDVEVP  480
AEVLTDGTLR CYAPAHQSGR VPFYVTCSNR VACSEVREFE YRDSNYQYME TSYSETNGIN  540
EMHLHIRLEK LLSLRPDDHQ LLVSSNGNEK HELINSINSL MLDEKWSDQG SLSDGKEVFT  600
ARDQSSKKFV KDRLHYWLIC KVNDDGKGPN VLCKEGQGVI HLVAALGYDW AIRPIIVAGV  660
NVNFRDAHGW TALHWAASCG RERSVGILMA NGAASGALTD PSSEFPSGRT PADLASANGH  720
KGIAGFLAES ALTSHLSQLT IRDSKDSGVQ EVCGLPVAED LTETNSSQLA LDDSHAESLK  780
GSLSAVRKST QAAARIFQAF RVESFHRKKV VEYGDDDCGL SDEHTLSLVS LKNAKLGQHD  840
THLHSAAVRI QNKFRGWKGK REFMIIRQRI VKLQAHVRGH QVRKSYRKVI WSVGIVEKVI  900
LRWRRKRRGL RAFQPEKQLE GPSQIQPANA EDEYDFLQDG KRQAEARLQR ALARVHSMAQ  960
YPEAREQYQR LTTCVAEMQQ SRVMQDEMLS EAAGADGSDF MTGLEDLICR DDAQMPAIW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G200900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228547.10.0calmodulin-binding transcription activator 3 isoform X2
TrEMBLI1H4X20.0I1H4X2_BRADI; Uncharacterized protein
STRINGBRADI1G60817.20.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.20.0ethylene induced calmodulin binding protein