PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G197200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 271aa    MW: 29535 Da    PI: 7.5396
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G197200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.2e-161461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd +lv +v+ +G+g+W++++   g+ R+ k+c++rw +yl
  Brast02G197200.1.p 14 KGPWTPEEDIILVSYVQDHGPGNWRAVPPNTGLMRCSKSCRLRWTNYL 61
                        79********************************************97 PP
2Myb_DNA-binding50.74.3e-1667112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+++++E++ +v++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Brast02G197200.1.p  67 RGNFSEQEEKHIVQLQALLGNR-WAAIASYLP-DRTDNDIKNYWNTHL 112
                         89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-23564IPR009057Homeodomain-like
PROSITE profilePS5129424.375965IPR017930Myb domain
SuperFamilySSF466897.49E-3011108IPR009057Homeodomain-like
SMARTSM007173.7E-131363IPR001005SANT/Myb domain
PfamPF002492.5E-151461IPR001005SANT/Myb domain
CDDcd001677.78E-111661No hitNo description
Gene3DG3DSA:1.10.10.606.1E-2465116IPR009057Homeodomain-like
PROSITE profilePS5129419.53566116IPR017930Myb domain
SMARTSM007177.2E-1566114IPR001005SANT/Myb domain
PfamPF002493.6E-1567112IPR001005SANT/Myb domain
CDDcd001671.13E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MGRPPCCDKD GVKKGPWTPE EDIILVSYVQ DHGPGNWRAV PPNTGLMRCS KSCRLRWTNY  60
LRPGIRRGNF SEQEEKHIVQ LQALLGNRWA AIASYLPDRT DNDIKNYWNT HLKKKLLHRT  120
TKATPAPHKD HSNKGQWERR LQTDIHLARQ ALREALSLDT TATATTAPAA YALSAQNVSR  180
MLDAWATRAA ADSASSEVTQ CSGGSTASDG TLWSSLLGRE STGAAAAAGD QDDPAALSAI  240
ESWLLLDVDG TDRQQPPEQE QSGLLAATLI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-25141164105MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-25141164105C-Myb DNA-Binding Domain
1msf_C1e-25141164105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G197200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0988921e-133FP098892.1 Phyllostachys edulis cDNA clone: bphylf052j22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003561588.11e-165myb-related protein 306
SwissprotP813923e-94MYB06_ANTMA; Myb-related protein 306
TrEMBLI1H5111e-163I1H511_BRADI; Uncharacterized protein
STRINGBRADI1G61160.11e-164(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62470.22e-80myb domain protein 96
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]