PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G194500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 366aa    MW: 40374.6 Da    PI: 7.4461
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G194500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.65.2e-1788135148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg W++eEde+l + ++++G g+W+++++  g+ R++k+c++rw +yl
  Brast02G194500.1.p  88 RGLWSPEEDEKLMNHIAKYGHGSWSSVPKLAGLERCGKSCRLRWINYL 135
                         788*******************************************97 PP
2Myb_DNA-binding52.98.2e-17141185147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg +++eE++l+++++ +lG++ W+ Ia+ ++ gRt++++k++w++y
  Brast02G194500.1.p 141 RGTFSQEEEDLIIHLHSMLGNK-WSQIASQLP-GRTDNEVKNFWNSY 185
                         899*******************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.5E-2779138IPR009057Homeodomain-like
PROSITE profilePS5129418.97783135IPR017930Myb domain
SuperFamilySSF466899.73E-3185182IPR009057Homeodomain-like
SMARTSM007178.0E-1387137IPR001005SANT/Myb domain
PfamPF002491.2E-1588135IPR001005SANT/Myb domain
CDDcd001671.26E-1191135No hitNo description
PROSITE profilePS5129426.821136190IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.0E-26139190IPR009057Homeodomain-like
SMARTSM007173.2E-16140188IPR001005SANT/Myb domain
PfamPF002498.9E-16141185IPR001005SANT/Myb domain
CDDcd001671.87E-11143186No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MRQGTPTLQC TGTYPRATAL FPLPCLAPPR RLSSFYTSAF PSPRSLAPSC LHRVHILVDS  60
IQPYVILDGG ARPAMAKQSC CHKKRLRRGL WSPEEDEKLM NHIAKYGHGS WSSVPKLAGL  120
ERCGKSCRLR WINYLRPDLK RGTFSQEEED LIIHLHSMLG NKWSQIASQL PGRTDNEVKN  180
FWNSYIKKKL RERGIDPATH KPLAEAPTSP ACRAVFSESE LNNPTTTPAQ VEQMLEGLKM  240
PLEEDYWPNG MSGCYPSLQA GSCAFDMGAL QQHCAFPAAS SSSTLTGQQS PGASLQPWLE  300
LGPTDAGDEL RWSDYFDGAC FQQAAAPTTT TTQQQGVHYC AYVDSGNGKD DDAVHFDVHG  360
LSNWC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29861905108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G194500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3544391e-162AK354439.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1007F18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003557879.11e-172myb-related protein 308
TrEMBLI1H5421e-170I1H542_BRADI; Uncharacterized protein
STRINGBRADI1G61397.11e-171(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30923385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G57560.11e-76myb domain protein 50