PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G182000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CO-like
Protein Properties Length: 392aa    MW: 43100.8 Da    PI: 5.8053
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G182000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.81.5e-053071237
            zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                        ee  C+ ++  ++  +C+ ++  lC  C  + H        H
  Brast02G182000.1.p 30 EEVSCDYCSGARAVVYCRADSARLCLPCDRHVHAAnavcsrH 71
                        7889**************************999555555556 PP
2CCT61.62.5e-21346388345
                 CCT   3 aallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                           ++RYkeKr+tR+F+K++rYesRKa+A+sR R+KGrF+k+++
  Brast02G182000.1.p 346 IVISRYKEKRRTRRFDKQVRYESRKARADSRLRIKGRFAKANQ 388
                         5689************************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.3952976IPR000315B-box-type zinc finger
SMARTSM003365.1E-112976IPR000315B-box-type zinc finger
CDDcd000217.82E-73276No hitNo description
PROSITE profilePS5101714.942344386IPR010402CCT domain
PfamPF062034.7E-16344386IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MGQDERQDRQ VAPQAQMEQE EREGEMAAHE EVSCDYCSGA RAVVYCRADS ARLCLPCDRH  60
VHAANAVCSR HARAPLCAAC SAAGAVFRSA AAASFLCSNC DFGRNRDGEP PLHDRCTVQA  120
YTGRPSAHDL AAVLGVPDFE KPPADQGWWT IWEEPQVFSL QDLIVPTTSC HGFQPLVTPS  180
SPKNQRSPDG KTNVEVIRQL RELAEADGRG TQIAPREEAE QAAHQLPSWE PSEYIAGNGN  240
FATENSHEVL ATMPTPGYEN GGWNDSSDYH ALNDVCKNEY EHEQAPVGSA EACLSSFVQM  300
SELCPSMSNG STRDDSQQAN LGIGMSLQAF PKRGSFDVVA GPDRDIVISR YKEKRRTRRF  360
DKQVRYESRK ARADSRLRIK GRFAKANQIN P*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G182000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003561634.20.0zinc finger protein CONSTANS-LIKE 13
TrEMBLA0A0Q3HGP70.0A0A0Q3HGP7_BRADI; Uncharacterized protein
STRINGBRADI1G62420.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37592222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.13e-44B-box type zinc finger protein with CCT domain