PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast02G165900.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

G2-like

Protein Properties

Length: 349aa MW: 38645.6 Da PI: 8.187

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast02G165900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	109.2	2.1e-34	46	100	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLH+rFveav+qLGG++kAtPkti++lm+v+gLtl+h+kSHLQkYRl Brast02G165900.1.p 46 KPRLKWTPELHDRFVEAVNQLGGPDKATPKTIMRLMGVPGLTLYHLKSHLQKYRL 100 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.831	43	103	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.8E-33	44	101	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.94E-18	45	101	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.2E-25	46	101	IPR006447	Myb domain, plants
Pfam	PF00249	1.7E-10	48	99	IPR001005	SANT/Myb domain
Pfam	PF14379	1.8E-25	144	191	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MYHQQQLQRH SQLLSSRQTF PSERHLLLQG GIVPGESGLV LSTDAKPRLK WTPELHDRFV 60 EAVNQLGGPD KATPKTIMRL MGVPGLTLYH LKSHLQKYRL SKNLHAQANV GSSRNGCTMA 120 TEKHSEGTGS PVSHHLGTQT NKSMHIGEAL QMQIEVQRRL HEQLEVQRHL QLRIEAQGKY 180 LQSVLEKAHE TLAKQNTGSA SLENAKMQLS ELVSKVSTEC LQNAFTGFEE IQGSQMLQTM 240 QLGDGSVDSC LTACEGSQRD QDILSISLSA KKGKEIGGMA FDLQMKGGHG NLFLDKLSRR 300 PSNHQEGHER TDGFSMSCQN TKLDLNINET NDGPQNCKKF DLNGFSWA*

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MYHQQQLQRH SQLLSSRQTF PSERHLLLQG GIVPGESGLV LSTDAKPRLK WTPELHDRFV  60
EAVNQLGGPD KATPKTIMRL MGVPGLTLYH LKSHLQKYRL SKNLHAQANV GSSRNGCTMA  120
TEKHSEGTGS PVSHHLGTQT NKSMHIGEAL QMQIEVQRRL HEQLEVQRHL QLRIEAQGKY  180
LQSVLEKAHE TLAKQNTGSA SLENAKMQLS ELVSKVSTEC LQNAFTGFEE IQGSQMLQTM  240
QLGDGSVDSC LTACEGSQRD QDILSISLSA KKGKEIGGMA FDLQMKGGHG NLFLDKLSRR  300
PSNHQEGHER TDGFSMSCQN TKLDLNINET NDGPQNCKKF DLNGFSWA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-20	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-20	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-20	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-20	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00331	DAP	Transfer from AT3G04030	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast02G165900.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003558005.1	0.0	myb-related protein 2
Swissprot	Q9SQQ9	1e-109	PHL9_ARATH; Myb-related protein 2
TrEMBL	I1H5Y2	0.0	I1H5Y2_BRADI; Uncharacterized protein
STRING	BRADI1G63690.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3574	38	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-107	G2-like family protein

Link Out ? help Back to Top
Phytozome	Brast02G165900.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]