PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast02G147000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 296aa MW: 31933.8 Da PI: 5.8458 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.4 | 2.4e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l+ + +G+g+W++++++ g++R++k+c++r+ +yl Brast02G147000.1.p 14 KGLWTPEEDAKLLAYTSNHGTGNWTSVPQRAGLKRCGKSCRLRYTNYL 61 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.6 | 5.1e-17 | 69 | 110 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++T+eE+el+v ++++lG++ W++Ia+ ++ gRt++++k++w++ Brast02G147000.1.p 69 NFTQEEEELIVTLHAMLGSR-WSLIANQLP-GRTDNDVKNYWNT 110 89******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-24 | 5 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.794 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.17E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.6E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.6E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.38E-10 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.003 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-23 | 66 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-15 | 69 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.13E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MGRPPCCDKA NVKKGLWTPE EDAKLLAYTS NHGTGNWTSV PQRAGLKRCG KSCRLRYTNY 60 LRPNLKHENF TQEEEELIVT LHAMLGSRWS LIANQLPGRT DNDVKNYWNT KLSKKLRQRG 120 IDPITHRPIA DLMQSIGTLA IRPPPPASYF PINNPPPPLP LLHDDDASYH AAPQQQHQQQ 180 QVITLLDADA PGAAASPDHQ QQQQLKWSDF LADDAALEAA APAQPQEAAA GGGGPARACG 240 GGGARDDGAA FIDAMLESDR EMGVDQLIAE LLADPAYYYG AAGCGSSSSE MGWGC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-25 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the DNA sequence 5'-CCAACC-3'. Regulates directly PME5, UND and GLOX1 (PubMed:21673079). Essential for tapetum development in anthers and microsporogenesis (PubMed:12848824, PubMed:21673079). Regulates the timing of tapetal programmed cell death (PCD) which is critical for pollen development. May act through the activation of UND, encoding an A1 aspartic protease (PubMed:21673079). Required for anther development by regulating tapetum development, callose dissolution and exine formation. Acts upstream of A6 and FAR2/MS2, two genes required for pollen exine formation (PubMed:17727613). Negatively regulates trichome endoreduplication and trichome branching (PubMed:12848824). {ECO:0000269|PubMed:12848824, ECO:0000269|PubMed:17727613, ECO:0000269|PubMed:21673079}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast02G147000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK372736 | 0.0 | AK372736.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3010N13. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003558134.2 | 1e-146 | myb-related protein Zm38 | ||||
Swissprot | Q9XHV0 | 2e-66 | MYB80_ARATH; Transcription factor MYB80 | ||||
TrEMBL | A0A2K2DTG4 | 1e-144 | A0A2K2DTG4_BRADI; Uncharacterized protein | ||||
STRING | OB03G23760.1 | 1e-138 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11874 | 34 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56110.1 | 5e-67 | myb domain protein 103 |
Link Out ? help Back to Top | |
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Phytozome | Brast02G147000.1.p |