PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast02G135300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 187aa MW: 19694.5 Da PI: 9.053 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11 | 0.0013 | 58 | 80 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+++F++ L H +H Brast02G135300.1.p 58 FECKTCSRRFPSFQALGGHRASH 80 89**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.24E-8 | 56 | 122 | No hit | No description |
Pfam | PF13912 | 4.1E-13 | 57 | 82 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.785 | 58 | 85 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.27 | 58 | 80 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 60 | 80 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.7E-9 | 99 | 124 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.559 | 100 | 127 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 2.9 | 100 | 122 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 102 | 122 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0071289 | Biological Process | cellular response to nickel ion | ||||
GO:2000280 | Biological Process | regulation of root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MAHGKRSRQQ AEARGVSLLD LDSGDMARIL MLFSGQHHIE LQHGFAAQPS SSSPERVFEC 60 KTCSRRFPSF QALGGHRASH KKPRLADDGA QPEQPKPKVH GCSVCGLEFA VGQALGGHMR 120 RHRAAVAQSG LGLGLGLGLG LGPKDGGGKK TAHAAAELAL DLNVPALEEE PELAAGLFPV 180 VVDFRR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast02G135300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010228788.1 | 1e-87 | zinc finger protein ZAT11 | ||||
TrEMBL | I1H6V4 | 3e-86 | I1H6V4_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G66330.1 | 5e-87 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP501 | 37 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28710.1 | 4e-26 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast02G135300.1.p |