PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G125800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 477aa    MW: 49912.4 Da    PI: 9.1853
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G125800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011216239123
                         EEETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                         ++C+ Cg++ s + +L+ H+ t H
  Brast02G125800.1.p 216 FPCKSCGEVLSKPQQLELHQATkH 239
                         89******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.182216244IPR007087Zinc finger, C2H2
PROSITE patternPS000280218239IPR007087Zinc finger, C2H2
SuperFamilySSF563991.21E-8241286No hitNo description
Gene3DG3DSA:3.90.228.102.7E-8261475IPR012317Poly(ADP-ribose) polymerase, catalytic domain
SuperFamilySSF563991.21E-8317475No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MAGGGSRSSL LRGFLSLFFV LFLHIGHAAC CFSPGSDSQQ HEEDAAEADG KGTGVGSSSS  60
KRRKISPLAF SPAASSSSTV AVEERARARR SRRHVSSLAA NLRCYLHRIF SSSGPNNNAA  120
GRAAGEEEDA ATLTTTLSSP LPQSSSMTMT PQQQHLAATS SSMMLSPPPS PCASSSPLFL  180
YSQSPMSPRS LSVTPPVPCS PARRLSRSFA ARGDLFPCKS CGEVLSKPQQ LELHQATKHS  240
LSELSVLDSS TNIIRMIFLA GWSPSPPVAV RRVLRIHHNP RALARFEEYR GLVRARAARR  300
SSSAAALQQG AGAAEEERCI ADGNERLRFH CATALCSQLG SSGSSGGGGV CGSPYCCACT  360
ILRHGFAGKQ ADVDGIATYS SGRAAHASLP EEVEREFAFL QVRRAMLVCR VVAGRVVVRG  420
GGAAAGDGDK VGYDSMVPAT PVGAGGGGRR GEGDADQLLV FNPRAVLPCF AIMYSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G125800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2318154e-65AC231815.1 Oryza minuta clone OM__Ba0073C01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003558290.10.0uncharacterized protein LOC100821543
TrEMBLI1H7610.0I1H761_BRADI; Uncharacterized protein
STRINGBRADI1G67230.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105173037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-38C2H2 family protein