PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast02G122500.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bHLH

Protein Properties

Length: 424aa MW: 44801.9 Da PI: 5.5208

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast02G122500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.1	1.6e-13	216	262	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr+llP+ +K +Ka+ L ++++++k+L Brast02G122500.1.p 216 KSHSEAERRRRERINAHLARLRSLLPNT-----TKTDKASLLAEVIQHVKEL 262 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	17.022	213	262	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.9E-11	216	262	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.25E-4	216	265	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.2E-14	217	273	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.11E-15	217	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-13	219	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	7.3E-4	306	355	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence Send to blast
MGAHGDRRRH RREEVGALLD EEEEDLEQQH AGGAACGGAT STGAAEEELL GGGCEEAAGG 60 AGMVFEPSSS VGSASAAMGP PPIMCWPPPP APSSQALHHH NLNNLGGGGQ QGHFFPLLPP 120 QPPPPPPPFF ADLYARRALQ FAYDHHHHVH SGGGGGASSS SDPLGLYMGM AGYGQYGGSP 180 GAGMMMPPPF GPSPFGDFGR MTAQEIMDAK ALAASKSHSE AERRRRERIN AHLARLRSLL 240 PNTTKTDKAS LLAEVIQHVK ELKRQTSEIR EDAASACPCP LPTESDELTV EYASGDEDGR 300 LLVRASLCCD DRADLLPDLI RALKALRLRA LKAEITTLGG RVKNVLLVTE DHGRDHHQDD 360 DDDDDEPMPM SPQHAVASIQ EALRAVMERT GAASAEDSGG SGSGGLKRQR TTSLSAILEN 420 RSI*

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence Send to blast

MGAHGDRRRH RREEVGALLD EEEEDLEQQH AGGAACGGAT STGAAEEELL GGGCEEAAGG  60
AGMVFEPSSS VGSASAAMGP PPIMCWPPPP APSSQALHHH NLNNLGGGGQ QGHFFPLLPP  120
QPPPPPPPFF ADLYARRALQ FAYDHHHHVH SGGGGGASSS SDPLGLYMGM AGYGQYGGSP  180
GAGMMMPPPF GPSPFGDFGR MTAQEIMDAK ALAASKSHSE AERRRRERIN AHLARLRSLL  240
PNTTKTDKAS LLAEVIQHVK ELKRQTSEIR EDAASACPCP LPTESDELTV EYASGDEDGR  300
LLVRASLCCD DRADLLPDLI RALKALRLRA LKAEITTLGG RVKNVLLVTE DHGRDHHQDD  360
DDDDDEPMPM SPQHAVASIQ EALRAVMERT GAASAEDSGG SGSGGLKRQR TTSLSAILEN  420
RSI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	221	226	ERRRRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast02G122500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK377163	0.0	AK377163.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3150E20.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003558309.1	1e-164	transcription factor bHLH30
Swissprot	Q9S7Y1	2e-72	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A3B6HT28	1e-163	A0A3B6HT28_WHEAT; Uncharacterized protein
TrEMBL	A0A446QQZ7	1e-163	A0A446QQZ7_TRITD; Uncharacterized protein
STRING	Traes_4AS_DD16F89E7.1	1e-164	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1918	38	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	2e-52	bHLH family protein

Link Out ? help Back to Top
Phytozome	Brast02G122500.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]