PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast02G121200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | GATA | ||||||||
Protein Properties | Length: 217aa MW: 23373.1 Da PI: 6.1056 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 49.7 | 5.1e-16 | 121 | 155 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nC+t++Tp W++gp+g+k+LCn C ++++k+++ Brast02G121200.1.p 121 CANCRTSSTPFWHNGPRGPKSLCNTCVIRFKKEER 155 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 1.38E-9 | 114 | 154 | No hit | No description |
SMART | SM00401 | 2.7E-9 | 115 | 167 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 10.396 | 115 | 151 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 4.4E-11 | 115 | 155 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 1.7E-13 | 121 | 155 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 2.24E-9 | 121 | 152 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MASNTFPLFF PPMPVKAAAG QQWPPAEQAA SYEDLSSAVT SPSSPFSDDS SAGSLLVDCT 60 LSLGTPSSCA HRVSEPVSAD VDSCYRFYQQ QQSMPAAGIG MAGVWSGGHE QQQQEEDRRC 120 CANCRTSSTP FWHNGPRGPK SLCNTCVIRF KKEERRAAET GGCGLPLRGA QRVAAAPIAR 180 RAAHEEPFLE LEWRLLNAVP DSPAVWPAER ASLQYQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast02G121200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU722206 | 4e-32 | GU722206.1 Hordeum vulgare subsp. vulgare cultivar Bowman third outer glume (TRD) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003565832.1 | 3e-68 | GATA transcription factor 15 | ||||
TrEMBL | A0A0Q3QT27 | 6e-67 | A0A0Q3QT27_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G14890.1 | 6e-68 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1665 | 37 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18380.1 | 6e-21 | GATA transcription factor 20 |
Link Out ? help Back to Top | |
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Phytozome | Brast02G121200.1.p |