PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G117900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 95aa    MW: 10108.8 Da    PI: 6.5278
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G117900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.51.3e-07246344
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                        +W++ E  ++  a + +  +   +W+++a+ +g g+t+ +++ ++
  Brast02G117900.1.p  2 AWSEAENGRFESALATYDRDtagRWERVAAAVGGGKTADDVRRHF 46
                        7*****************99************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002493.7E-6147IPR001005SANT/Myb domain
PROSITE profilePS5129310.075154IPR017884SANT domain
SuperFamilySSF466891.99E-9358IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MAWSEAENGR FESALATYDR DTAGRWERVA AAVGGGKTAD DVRRHFELLT EHVVDIESGR  60
YGYPDNGAAN NATAAAASNR RGNNGRNRAN GPQT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-152651072RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G117900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024313364.15e-42protein RADIALIS-like 3
SwissprotQ6NNN05e-20RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLI1H7D61e-40I1H7D6_BRADI; Uncharacterized protein
STRINGBRADI1G67910.12e-41(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-19RAD-like 6