PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G113300.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 750aa    MW: 82681.5 Da    PI: 5.5035
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G113300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.14e-084486347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        +WT +E+e + +a +q G++ +++I  +++  +   q++++++ +
  Brast02G113300.2.p 44 AWTHQEEESFFNALRQVGKN-FEKITLRVQ-SKNKDQVRHYYYRL 86
                        6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.12E-93690IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.4E-53989IPR009057Homeodomain-like
PROSITE profilePS5129312.6864091IPR017884SANT domain
SMARTSM007171.7E-54189IPR001005SANT/Myb domain
CDDcd001672.03E-54487No hitNo description
PfamPF002494.2E-64486IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MEKEASEEMS PPPQPVDFPL ATLLSASDPD KKKPAKKPTR QWAAWTHQEE ESFFNALRQV  60
GKNFEKITLR VQSKNKDQVR HYYYRLVRRM KKILGPEFSL DARNSKDTIA AMLRWWSLLE  120
KFSCSASKLH LRPRRMKTFV ETLGNQLLKD RKRTRRKCPQ GDMYLASTPI LSKTPGNQSS  180
SLELLPTDAQ DGSIVACSKG AFSKRVVETN SNRLGAIKGD LSATRTVKQK RRAGGIGASA  240
AYKKWERAAM AGVSLVADAA EEIERSIVTQ NLSNVDARPL ASSPNNVATV EATGTNHMKE  300
ADPQAPSKLK LQLFPINEAT RKALEKDEHN PHLELTLSAR KKMSSVLEHL NRKWGNSNIA  360
CGELVLFPYC AHQEDLATYQ RWTTRDTVAV ADVFLAVNSP SVFRLRYGWF SLAELEAGVS  420
EISLTHFENC MIPEDVQVKS SSEACAQKDY TSLGGLTSEH PSCNSNDQSS LLLGTPSSTD  480
KNAEEEQSTN VSPSQSGSQQ QEEVPDQVTE VYQGMKCVAI SEAEWADTLT DISVGYLLTE  540
ASKGAKLDCP GTSSVKNALL LDNSCSYDSF DAAVALHTSR YQVAEQSART SHSNIWGAEE  600
TCDEFSFKLA AGRKQEGSNT LAGSPPDSDN EVHSSNSEGF RGFLEDLAGG EVADNPCIYD  660
VKDIELCAMS PPQNDKDSGL KDQSLADIYW PDSLGPLDLE IPSTRYQPED FFLGDSQNSW  720
GRMMASSLDA FRNLSFFTSD KNDSIPPIM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G113300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228893.10.0TSL-kinase interacting protein 1
TrEMBLI1H7K70.0I1H7K7_BRADI; Uncharacterized protein
STRINGBRADI1G68510.20.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.21e-164TSL-kinase interacting protein 1