PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast02G112600.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 265aa MW: 27117.9 Da PI: 6.9559 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.2 | 0.00026 | 83 | 105 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Brast02G112600.4.p 83 FTCNYCQRKFFSSQALGGHQNAH 105 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.61E-6 | 81 | 110 | No hit | No description |
PROSITE profile | PS50157 | 11.323 | 83 | 110 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 85 | 105 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MKSSNSFLRQ EPCEDQLSLS DISSQAASNN EASNSSSGGP PVALDLSLAV AVAAAATESS 60 TTDSGGGGAK AAAAGAREPA RVFTCNYCQR KFFSSQALGG HQNAHRRERT LARRAVHHRL 120 DAFPYGGSYA DVASLPLYGS HGLYHPIGIQ AHASAHRQGL VAVAAAAPAA PADRHQHQQD 180 AVLASAAEAR PGRALLGPMP FLVGGEEEAA SCYGTSWPGS FRAPSGGVLL THDPRAFHSG 240 SSNLGGGGSA LVQADEEPDL TLRL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast02G112600.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003558394.1 | 1e-104 | zinc finger protein 4 isoform X2 | ||||
Refseq | XP_024312413.1 | 1e-103 | zinc finger protein 4 isoform X1 | ||||
TrEMBL | A0A0Q3HII5 | 1e-102 | A0A0Q3HII5_BRADI; Uncharacterized protein | ||||
TrEMBL | I1H7L5 | 1e-102 | I1H7L5_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G68570.1 | 1e-103 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80730.1 | 1e-25 | zinc-finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Brast02G112600.4.p |