PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G112600.3.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 265aa    MW: 27117.9 Da    PI: 6.9559
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G112600.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.0002683105123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C + F ++  L  H++ H
  Brast02G112600.3.p  83 FTCNYCQRKFFSSQALGGHQNAH 105
                         89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.61E-681110No hitNo description
PROSITE profilePS5015711.32383110IPR007087Zinc finger, C2H2
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MKSSNSFLRQ EPCEDQLSLS DISSQAASNN EASNSSSGGP PVALDLSLAV AVAAAATESS  60
TTDSGGGGAK AAAAGAREPA RVFTCNYCQR KFFSSQALGG HQNAHRRERT LARRAVHHRL  120
DAFPYGGSYA DVASLPLYGS HGLYHPIGIQ AHASAHRQGL VAVAAAAPAA PADRHQHQQD  180
AVLASAAEAR PGRALLGPMP FLVGGEEEAA SCYGTSWPGS FRAPSGGVLL THDPRAFHSG  240
SSNLGGGGSA LVQADEEPDL TLRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G112600.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003558394.11e-104zinc finger protein 4 isoform X2
RefseqXP_024312413.11e-103zinc finger protein 4 isoform X1
TrEMBLA0A0Q3HII51e-102A0A0Q3HII5_BRADI; Uncharacterized protein
TrEMBLI1H7L51e-102I1H7L5_BRADI; Uncharacterized protein
STRINGBRADI1G68570.11e-103(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.11e-25zinc-finger protein 1