PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G111200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 432aa    MW: 45371.4 Da    PI: 9.6916
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G111200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.37.3e-0784106123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C++Cg+ F r  nL+ H r+H
  Brast02G111200.1.p  84 YVCEICGQGFQREQNLQMHRRRH 106
                         9*********************9 PP
2zf-C2H210.80.0016180202123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C  C k +  +s++k H++t+
  Brast02G111200.1.p 180 WVCARCAKGYAVQSDYKAHLKTC 202
                         58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.4E-583106IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.54E-783106No hitNo description
SMARTSM003556.5E-484106IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.75984106IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
SMARTSM00355110144174IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.54E-7175200No hitNo description
SMARTSM00355270180207IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MALAVKSHHH QMLASSSTSS SSPSSQPLPP PPAPAAPPAA TSSSCLAADQ PSPAKRKRRP  60
PGTPDPDAEV VALSPRTLLE SDRYVCEICG QGFQREQNLQ MHRRRHKVPW RLVKRAAAGP  120
DQDGGGGTAG AGAAASTAPR KRVFVCPEPS CLHHDPAHAL GDLVGIKKHF RRKHGGRRQW  180
VCARCAKGYA VQSDYKAHLK TCGTRGHSCD CGRVFSRVES FIEHQDACNS GRMRGEPVPA  240
AAALPVIRPA VVLRPPPPPP SELQLLPAAP KPPLAAIGAV LQSTTREGEP HAATTTKLEL  300
SIGSPTAAHN DVGQEEAILR RAMEEKAAAD GERERAREEA AAAERALEEA RRARQRARAE  360
LEAACALRDH AARLVAQATC HACRHQQQRS FAANAGVVVS VGGGEGHGGS GAAAVACESG  420
LMVRARGGLG L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-17176230357Zinc finger protein JACKDAW
5b3h_F6e-17176230357Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:21556057, ECO:0000269|PubMed:24039602}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G111200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3761500.0AK376150.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3116F03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003561843.11e-172protein indeterminate-domain 16
SwissprotQ9C9X71e-107IDD14_ARATH; Protein indeterminate-domain 14
TrEMBLI1H7N31e-170I1H7N3_BRADI; Uncharacterized protein
STRINGBRADI1G68730.11e-171(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105138124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.15e-89C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Arendsee ZW,Li L,Wurtele ES
    Coming of age: orphan genes in plants.
    Trends Plant Sci., 2014. 19(11): p. 698-708
    [PMID:25151064]
  2. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]