PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast02G110500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 252aa MW: 27216.7 Da PI: 7.6117 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.2 | 4e-13 | 25 | 74 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48 W+++Ed l + v+++G +W+++a+ + ++Rt k+c++rw+++l Brast02G110500.1.p 25 MWSEDEDRVLREQVRLHGAQSWDKVAEALEqalpNHRTSKSCRLRWYQHL 74 5**********************************************996 PP | |||||||
2 | Myb_DNA-binding | 46.8 | 7e-15 | 83 | 125 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T +Ed+l++++ + +G++ W+tIa + gRt++ +k+rw+++ Brast02G110500.1.p 83 PFTRDEDKLIIHYQAIHGNR-WSTIAGFLS-GRTDNAVKNRWNSV 125 89******************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.055 | 18 | 78 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-15 | 22 | 77 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-12 | 22 | 76 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.67E-27 | 22 | 122 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.0E-12 | 25 | 74 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.13E-11 | 26 | 74 | No hit | No description |
SMART | SM00717 | 4.6E-12 | 80 | 128 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-12 | 83 | 126 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.53E-11 | 83 | 126 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-18 | 83 | 127 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.125 | 83 | 130 | IPR017930 | Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MSSTPGTSGS GGGHPPHRHV SKKTMWSEDE DRVLREQVRL HGAQSWDKVA EALEQALPNH 60 RTSKSCRLRW YQHLDPKVDA VKPFTRDEDK LIIHYQAIHG NRWSTIAGFL SGRTDNAVKN 120 RWNSVLKCHA RAPSAEHPRP PCAAARRAAG AELTPGCLPL FPLASGDVRQ HGSGPWPGVF 180 MPQASEEDVS EVETGTCLEL FSLAPGDIRN NAGAAASKGM SCGAGDPLTE LRLGSAAVEV 240 FDVMPLQAYP M* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-21 | 26 | 127 | 10 | 105 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast02G110500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003561848.1 | 1e-146 | transcription factor MYB23 | ||||
TrEMBL | I1H7P1 | 1e-145 | I1H7P1_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G68800.1 | 1e-146 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4960 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55730.1 | 1e-26 | myb domain protein 109 |
Link Out ? help Back to Top | |
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Phytozome | Brast02G110500.1.p |