PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G110400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 428aa    MW: 45219.4 Da    PI: 4.3365
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G110400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM32.82.1e-10151328127
                 NAM   8 hPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvka..eekewyfFskrdkkya...tgkrknratksgyWkatgkdkev 92 
                          Pt  e +  yL++ v+g++ l+++ +i+ +d+y + P +L +++    ++++ yf+++ ++       g r++ra++   W +  k k+v
  Brast02G110400.1.p  15 APTPAEAIGLYLRRWVAGDPiLDATGIIAAADVYAHPPPSLAAAFPRlpSTHDRYFYATCRRVPVrggAGYRTSRAVAGVSWGSNDK-KPV 104
                         599*****************7777788**************853333335668899999988766333577****999999*98766.777 PP

                 NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyr 127
                          ++      + + L f +  + +  +t W+m+e++
  Brast02G110400.1.p 105 EDA-----ATGEPLGFVE--KLRYGQTGWLMEEFH 132
                         773.....3445566652..222338********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510059.738171IPR003441NAC domain
SuperFamilySSF1019413.4E-1215138IPR003441NAC domain
PfamPF023652.1E-515132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
CRRLSPPSSS ACASAPTPAE AIGLYLRRWV AGDPILDATG IIAAADVYAH PPPSLAAAFP  60
RLPSTHDRYF YATCRRVPVR GGAGYRTSRA VAGVSWGSND KKPVEDAATG EPLGFVEKLR  120
YGQTGWLMEE FHRLPEEAAS AASTSTRPPS PAPSRSHTAA GELLLQQASM AADQQRMQPS  180
SPRNRRVMAL PVLPAPAPVT IRQKRAAPMA EPPRPKKRTR ASPAAAAAAA TRPIMATAPP  240
VVHVVALHQL PRPSWCPPPP PGLLVLEPRR PGPAVVTAAE CSPATTAAQD AADAAEFMAL  300
LEAELDKADS AVQEEQAPAA AQEEEEEEGD DWACFDAELF KEDTIQEQPS TAAAAQEEEA  360
PAAAAEQDLG DIASAARPSL EGLVADERGD DDIAEDLDDV LDLIGDEDDG DGAWQSMPLS  420
EYTDLQY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175185RMQPSSPRNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G110400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010239312.11e-124uncharacterized protein LOC104585070
TrEMBLA0A0Q3EQ521e-123A0A0Q3EQ52_BRADI; Uncharacterized protein
STRINGBRADI4G26470.11e-108(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2262136