PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Brast02G102900.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 625aa MW: 67261.9 Da PI: 7.3405 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.6 | 9.6e-16 | 275 | 334 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ +g ++ ++++lg ++ +++Aa+a++ a++k++g Brast02G102900.2.p 275 SQYRGVTRHRWTGRYEAHLWDnSCKkDGqtRKgRQVYLGGYDNEDKAARAYDLAALKYWG 334 78*******************988898888446**********99*************98 PP | |||||||
2 | AP2 | 46.9 | 7.1e-15 | 377 | 428 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Brast02G102900.2.p 377 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFTTQEEAAEAYDVAAIKFRG 428 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 9.8E-12 | 275 | 334 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-16 | 275 | 344 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.21E-20 | 275 | 342 | No hit | No description |
SMART | SM00380 | 1.2E-28 | 276 | 348 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.111 | 276 | 342 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.9E-16 | 276 | 343 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-6 | 277 | 288 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.9E-10 | 377 | 428 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.72E-24 | 377 | 438 | No hit | No description |
SuperFamily | SSF54171 | 9.81E-18 | 377 | 437 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.6E-33 | 378 | 442 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.072 | 378 | 436 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-18 | 378 | 436 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-6 | 418 | 438 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007276 | Biological Process | gamete generation | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0042127 | Biological Process | regulation of cell proliferation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 625 aa Download sequence Send to blast |
MRAMASGGNW LGFSLSPHMA MEVPSSSEPE HAHPHPPPPA ISASPANAAT CNFLFSAPAQ 60 MAAPPPGYYY VGGAYGDGSS TAGVYYSHHP VMPITSDGSL CIMEAMMPSS SPKLEDFLGG 120 GNGGGSHDTA TYYSHQQGQQ EEASRFYQHH QQLVPYNFQH LTEAEMYQQE ATAPMEEAMA 180 AAKNLLVTSY GSSCYSNVGM QPLSLSMSPG SQSSSCVSAA PQQHQMAAAA SVAASQGGSN 240 GGGEQCVGKK RGTGKGGQKQ PVHRKSIDTF GQRTSQYRGV TRHRWTGRYE AHLWDNSCKK 300 DGQTRKGRQV YLGGYDNEDK AARAYDLAAL KYWGPSTHTN FPLETYREDV EVMKSMTRQE 360 FVAHLRRRSS GFSRGASIYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFT TQEEAAEAYD 420 VAAIKFRGLN AVTNFDITRY DVDKIMESNS LLPGDEARKV KAVDAANDLI AIQNSGSQLY 480 PTDERSSTGG TDWRMVLHGT PQQAAPCTEV TDLRKGIMGD PHSSLHGIAG FDIESAAHDI 540 DVPGKISGGV NYSNSSSLVT SLSNSREGSP ERLGLAMLHA KHPNAVNLAT MSPWMAMPVP 600 GVAHAMRAPN NISHVPLFAA WADA* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00088 | SELEX | Transfer from AT4G37750 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Brast02G102900.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003558439.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT isoform X2 | ||||
Swissprot | Q38914 | 1e-146 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A2K2DU87 | 0.0 | A0A2K2DU87_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G69207.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-113 | AP2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Brast02G102900.2.p |