PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G100900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HSF
Protein Properties Length: 402aa    MW: 44431.5 Da    PI: 4.6314
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G100900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.13.7e-35531452103
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d++++++isw+e g+sfv++d++ f++++L ++Fkhsnf+SF+RQLn+YgF+kv+ ++         we++++ F +g+k+
  Brast02G100900.1.p  53 FLTKVYDMVSDPATDKVISWTEAGSSFVIWDSHAFERDLLRRHFKHSNFSSFIRQLNTYGFRKVDPDR---------WEWANEGFLRGQKH 134
                         9****************************************************************999.........************** PP

                         XXXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkkse 103
                         ll++ikrkk++
  Brast02G100900.1.p 135 LLKTIKRKKRS 145
                         ********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467855.71E-3449142IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.2E-5649142IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.9E-3750142IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.4E-3153142IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.7E-185376IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.7E-1891103IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434092116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.7E-18104116IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MGSKKASPPP SGAAASASRA AGLNEVSSDV SASTGNGTAP VGAVPKPPDV APFLTKVYDM  60
VSDPATDKVI SWTEAGSSFV IWDSHAFERD LLRRHFKHSN FSSFIRQLNT YGFRKVDPDR  120
WEWANEGFLR GQKHLLKTIK RKKRSPQEAG SELEQAPVKT PPGTENIEIG KYGGLVKEVE  180
TLKRDKALLM QQLVDLRHYQ QSSNLEVQNL VQRLQVMEQN QQQMMALLAI VVQNPSFLNQ  240
LVQQQQRRSN WWNADGNKKR RFPALEQGPV TNQETSGGGA EIIQYLPPVP ETSGQGIPDE  300
AFCSATAQPT SSPALDMPMD IDTQTTSDNL DTVGSFGDFF TDNPAMDDWD IELLFNDDGE  360
PIIAPVENNG QVDPPLSVQD YDFPQSEQDC QMEAQHNYKN P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-253514210129Heat shock factor protein 1
5d5v_B5e-253514210129Heat shock factor protein 1
5d5v_D5e-253514210129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G100900.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753057.10.0LOW QUALITY PROTEIN: heat stress transcription factor A-9-like
SwissprotQ10PR40.0HSFA9_ORYSJ; Heat stress transcription factor A-9
TrEMBLI1H7W30.0I1H7W3_BRADI; Uncharacterized protein
STRINGBRADI1G69407.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114943039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.29e-78heat shock factor 3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]