PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G100500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARR-B
Protein Properties Length: 678aa    MW: 72988.9 Da    PI: 6.5589
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G100500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like902.2e-28202255155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         kpr++W+ eLH++Fv+av++L G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  Brast02G100500.1.p 202 KPRVVWSVELHQQFVNAVNHL-GIDKAVPKKILELMNVPGLTRENVASHLQKFRL 255
                         79*******************.********************************8 PP
2Response_reg76.78.1e-26181261109
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                         vl+vdD+p+ + +l+++l + +y +++++++++ al +l+e++  +D+i+ D+ mp+mdG++ll+     e++lp+i+++a +  + + + 
  Brast02G100500.1.p  18 VLVVDDDPTCLAVLKRMLVQCRY-DATTCSQSTRALSMLRENRrgFDVIISDVHMPDMDGFRLLELVGL-EMDLPVIMMSADSRTDIVMKG 106
                         89*********************.***************99999********************87754.558****************** PP

                         HHTTESEEEESS--HHHHHH CS
        Response_reg  90 lkaGakdflsKpfdpeelvk 109
                         +k Ga d+l Kp+ +eel +
  Brast02G100500.1.p 107 IKHGACDYLIKPVRMEELKN 126
                         *****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.1E-1782662IPR017053Response regulator B-type, plant
SuperFamilySSF521723.84E-3515136IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.5E-4115150No hitNo description
SMARTSM004482.3E-2916128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.66517132IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.0E-2318126IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.68E-2719131No hitNo description
Gene3DG3DSA:1.10.10.609.4E-30199260IPR009057Homeodomain-like
PROSITE profilePS5129411.523199258IPR017930Myb domain
SuperFamilySSF466891.25E-19200259IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-25202255IPR006447Myb domain, plants
PfamPF002497.7E-7204253IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MAPPEEAGGG EFPVGMKVLV VDDDPTCLAV LKRMLVQCRY DATTCSQSTR ALSMLRENRR  60
GFDVIISDVH MPDMDGFRLL ELVGLEMDLP VIMMSADSRT DIVMKGIKHG ACDYLIKPVR  120
MEELKNIWQH VVRKKFGGNK EHEHSGSLDD TDRNRPTNND NEYASSVNDG ADDSWKSQKK  180
KRDKEEDDSE LESGDPSNSS KKPRVVWSVE LHQQFVNAVN HLGIDKAVPK KILELMNVPG  240
LTRENVASHL QKFRLYLKRI AQHHAGIANP YCTPASSAQV ASLGGLDFQA LAASGQIPPQ  300
ALAALQDELL GRTTTSMVLP GRDQSSLRLA AVKGNKPQGE REIAFGQPIY KCQNNSYGAF  360
PQSSPTVGRL PSFSTWPNNK LGMPDSTSTL GNVNNSQNSN IVLHESQQQP DTMLSGTLHA  420
LDVKPSGIAM PSQSLHTFPA TEGLSPNQSG FLTTIPPSMK PEPALPTSQQ SNNLLVGIDL  480
INQASTSQPF SNSHGGNLPG LMNHNSNVIP AQGISNFQTG NIPYLVNNSS IGVGSKPTGV  540
PKTESMDSLN QSFGYICGSS PMDSGLLSSQ PRNAQFGFLQ SPNDVTGGWS LQNVDNYRNT  600
IGPSHPVSSS SSFQSSNVAL GKLPDQGRGK NLGFVGKGTC IPNRFAVDEV ESPTNSLSHS  660
IGSSGDIPDI FGFSGQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-24199261264ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G100500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU1362710.0KU136271.1 Lolium perenne type-B response regulator ARR2 (ARR2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003558456.10.0two-component response regulator ORR21
SwissprotA2XE310.0ORR21_ORYSI; Two-component response regulator ORR21
TrEMBLI1H7X30.0I1H7X3_BRADI; Two-component response regulator
STRINGBRADI1G69480.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57963754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.11e-110response regulator 1