PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G079900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 502aa    MW: 52431.6 Da    PI: 9.5052
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G079900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-055981123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C++C+k F r  nL+ H r H
  Brast02G079900.1.p 59 FVCEICNKGFQRDQNLQLHRRGH 81
                        89*******************88 PP
2zf-C2H213.30.00025135157123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC +C+k +  +s+ k H +t+
  Brast02G079900.1.p 135 WKCDKCSKKYAVQSDWKAHTKTC 157
                         58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.38E-75881No hitNo description
Gene3DG3DSA:3.30.160.601.6E-55881IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0175981IPR015880Zinc finger, C2H2-like
PfamPF121718.0E-55981IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9495981IPR007087Zinc finger, C2H2
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
SMARTSM00355260100130IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.4E-4123156IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.38E-7130155No hitNo description
SMARTSM00355140135155IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MEAETSSATA ERAVPASSAA LLPPPAPPAK KKRALPGMPD PDAEVIALSP KTLMATNRFV  60
CEICNKGFQR DQNLQLHRRG HNLPWKLRQR SGKEVRKRVY VCPEPSCVHH DRSRALGDLT  120
GIKKHFCRKH GEKKWKCDKC SKKYAVQSDW KAHTKTCGSR EYRCDCGTLF SRRDSFITHR  180
AFCDALAEES AKARAPPSED GSSAAAAAAP PPLPAAPAPL QQLPPAPAPA PQPQHEEQER  240
EIRAAPEPVV QFTPPMPSPP PVTTGANVSG STSSVSATSQ SLRGSIFAPP SVAQAPPQYA  300
AAKPPSLCLT TDASSSLFSA PLAPPPSPSP HMSATALLQK AAQMGATSSS SSFLRGLGLD  360
VSSSSPASTS SGQQHSQVSF PEGSLPQWPP RLEPEPGPMM SAGLGLGLPY ELTGGPVGNP  420
GELMMGQSSL FSAKPATLDF LGLGMSPTGP SASRGLSVFM QPMGGAIRMA GSGAGAADTF  480
GAGRGAQAKP WERNPSSSPI L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-35131192364Zinc finger protein JACKDAW
5b3h_F4e-35131192364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G079900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3759900.0AK375990.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3111P12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152675.10.0protein indeterminate-domain 2-like
SwissprotQ9LVQ71e-140IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A446QM670.0A0A446QM67_TRITD; Uncharacterized protein
STRINGBRADI1G71330.10.0(Brachypodium distachyon)
STRINGTraes_4AS_501676A91.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-96C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]