PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G074400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CAMTA
Protein Properties Length: 1034aa    MW: 115605 Da    PI: 5.9073
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G074400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1177.12.2e-55191362118
                CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 
                         lke ++rwl++ ei++iL+n+++++++ e+++rp sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+++vl+cyYah+een
  Brast02G074400.1.p  19 LKEaQHRWLRPAEICEILKNYRNFRIAPEPPNRPASGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKSGSIDVLHCYYAHGEEN 109
                         45559************************************************************************************** PP

                CG-1  92 ptfqrrcywlLeeelekivlvhylevk 118
                          +fqrr+yw+Lee++ +ivlvhylevk
  Brast02G074400.1.p 110 INFQRRSYWMLEEDFMHIVLVHYLEVK 136
                         ************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143782.44715141IPR005559CG-1 DNA-binding domain
SMARTSM010761.6E-7618136IPR005559CG-1 DNA-binding domain
PfamPF038597.5E-4921135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.102.3E-5444531IPR013783Immunoglobulin-like fold
CDDcd001020.00395444531No hitNo description
SuperFamilySSF812964.76E-16445530IPR014756Immunoglobulin E-set
PfamPF018336.8E-6445529IPR002909IPT domain
CDDcd002046.95E-13628737No hitNo description
SuperFamilySSF484031.52E-16636740IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.4E-17639742IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.767645739IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.79645677IPR002110Ankyrin repeat
SMARTSM002480.033678707IPR002110Ankyrin repeat
PROSITE profilePS500888.63678710IPR002110Ankyrin repeat
SMARTSM002481400717746IPR002110Ankyrin repeat
SuperFamilySSF525404.25E-8849902IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.12851873IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.663852881IPR000048IQ motif, EF-hand binding site
PfamPF006120.0034853872IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0013874896IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.487875899IPR000048IQ motif, EF-hand binding site
PfamPF006120.0017876896IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1034 aa     Download sequence    Send to blast
MAEGRRYAIA PQLDIEQILK EAQHRWLRPA EICEILKNYR NFRIAPEPPN RPASGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKSGSIDVLH CYYAHGEENI NFQRRSYWML  120
EEDFMHIVLV HYLEVKAGKS SSRTREHDNM LQGARVDSPL SQLPSQTTDG ESSLSGQASE  180
YEETESDIYS GGAGYHSISR MQQHENGAGP IIDASFYSSY VPASSVGNQG LQATTTNTGF  240
YSYDQDNLPV VPNESGHGTP FNGPNGQFDL SSWNEMTKPD KRIHQMPPYG THVPSEHSPF  300
TEGPGIESFT FDEVYSNGLG IKDNSHADTD AEPLWQLPSA IGGSFATVDS FQQINGFLEE  360
AINYPLLKTQ SSNLSDILKD SFKKSDSFTR WMTKELADVD DSEIKPSSEY WNSEDADNII  420
GTSSHDQLDQ FTLGPMLAQD QLFSIIDFSP SWAYAGAKTR ILVTGKFLKP DEVIRLKWSC  480
MFGEIEVPAE ILADGTLGCY SPSQKTGRVP FYVTCSNRLA CSEVREFEYR PSNSQYMDAP  540
SLHGARNKTC LQMRLDKLLS LGPDEFHATL SNNTKELIDL NRKISLLMMN NDSWSELLKL  600
ADDNELITDD KQDQFLENCI RDKLHIWLLH KAGDGGKGPS VLDTEGQGVL HLAAALGYDW  660
AIRPTITAGV NINFRDARGW TALHWAAFCG RERTVVALIA LGAAPGALTD PSPDFPSGST  720
PADLASSNGH KGISGFLAEF SLTSHLQTLN LKEAMGSNAS EISGLPGIGD VTERSASPSA  780
PEGLQTGSMG DSLGAVRNAA QAAARIYQVF RVQSFQRKQA VQYEDDNGMI SDERALSLLS  840
YKTSKPGQFD PKHAAATRIQ NKFRGWKGRK EFLLLRRRVV QIQAHVRGHQ VRKHYRKIIW  900
SVGIVEKVIL RWRRRGAGLR GFRSTEGAPD STSSSAVDVI PNKPGEDDYS FLQEGRKQTE  960
ERLQRALARV KSMVQYPDAR DQYQRILTVV TKMQESQPMQ ENVLEESTEM DEGFLMSEFQ  1020
ELWDDDTPMP GYF*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G074400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003558617.10.0calmodulin-binding transcription activator 1 isoform X1
TrEMBLI1H8R10.0I1H8R1_BRADI; Uncharacterized protein
STRINGBRADI1G71810.20.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains