PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G072700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 359aa    MW: 38160.4 Da    PI: 6.5173
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G072700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.67.1e-16147198155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +rr+h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++Y+k+L+
  Brast02G072700.1.p 147 QRRTHIAVERNRRRQMNDYLAALRSLMPPS---YAQRGDQASIVGGAINYVKELE 198
                         79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.107.3E-15145202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.27E-14145202No hitNo description
SuperFamilySSF474591.22E-17146211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.691146197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-13147198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.9E-12152203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MALEAVVFAQ QDAHHHLGYG YGGPAPGSSS WESSSSAAAA PCSYTLAPWC DDEGLAGAGS  60
SGSGGLSDIF EDWDNHHRLA AAAPNLEDPF EAGSVDRQSS DAYSTEGKGK AAAQDQTPAV  120
VVAGAAAGRR KRRRAKVVKN KEEVESQRRT HIAVERNRRR QMNDYLAALR SLMPPSYAQR  180
GDQASIVGGA INYVKELEQL LQSLEVQKSV KSRDDGRGME PGSRSPFAGF FTFPQYSTTA  240
SSSSHGSDSS AGASNACNNV VKPEAGVADI EVTMAEGHAS LKVLVRRRPR QLLKLVAGLQ  300
QLRVPALHLN VTTLDAMALY SFSLKVEDGS KLGSVEDIAA AVHEILGRIQ REEEEAQA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129133RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G072700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003561963.10.0transcription factor bHLH94
SwissprotQ9C7T41e-78BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0Q3HKG60.0A0A0Q3HKG6_BRADI; Uncharacterized protein
STRINGBRADI1G71990.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.15e-70bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]