PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G069000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 295aa    MW: 33934.5 Da    PI: 7.9823
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G069000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.31.6e-12155201147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         r+ WTt+E+ l++++ +  G g Wk I+  + ++Rt+ q+ s+ qky
  Brast02G069000.1.p 155 RKFWTTDEHRLFLQGLNACGRGKWKNISMNFVTTRTPAQIASHAQKY 201
                         678*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.155150206IPR017930Myb domain
SMARTSM007175.0E-10154204IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-9155203IPR009057Homeodomain-like
SuperFamilySSF466897.9E-15155207IPR009057Homeodomain-like
TIGRFAMsTIGR015573.8E-14155204IPR006447Myb domain, plants
CDDcd001674.22E-7158202No hitNo description
PfamPF002492.9E-9158201IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MDPRENQEWT SYEVEEARSI IARLNSNNCS YNGDHHDKNK KHNIMLELQA KFPWKTIKQV  60
KDLYLDLVVE MHMMQGQQKE YGCVDGKHVD IYTLHGHVKQ NFGVPEEQEV SMDHKDFSFG  120
FTSEHVGIME TMKEVPMLGE NKMPIHQPVV APCARKFWTT DEHRLFLQGL NACGRGKWKN  180
ISMNFVTTRT PAQIASHAQK YFKRIESKGS GTQRYSIHDV ELGNNDQWKT EDSSRPGKRS  240
CLSMPTSSFL QVPSTSFVTM DNMAQFKFPS LKKTTQLVQS EKHMMDSVAE PWRG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G069000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014752587.21e-158protein REVEILLE 1
TrEMBLA0A0Q3KFN30.0A0A0Q3KFN3_BRADI; Uncharacterized protein
STRINGBRADI1G72300.11e-175(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.17e-23MYB family protein