PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast02G068700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | B3 | ||||||||
Protein Properties | Length: 236aa MW: 26564.4 Da PI: 9.0509 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.8 | 1.5e-16 | 135 | 225 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k +++s+v + +l lp +f++++ +k+ t+tl de+ +++e ++ ++++ l++GW +F+ ++g+ +gD+ vF+l++ ++f Brast02G068700.1.p 135 FVKRMLHSHVVRGFWLGLPSHFCDSYL-PKHD-STITLVDEKDEEFETNY--LAYKKG--LSGGWAGFALSHGILDGDSAVFQLIKPTTF- 218 89************************4.3434.49***************..555555..9***********************986777. PP .EEEEE-S CS B3 92 lvvkvfrk 99 +v+++r+ Brast02G068700.1.p 219 -KVHIIRA 225 .9999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.0E-18 | 126 | 226 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-23 | 128 | 225 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.94E-24 | 133 | 224 | No hit | No description |
PROSITE profile | PS50863 | 11.632 | 135 | 226 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.4E-15 | 135 | 225 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.3E-17 | 135 | 226 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MAIEKGMSPY EAVRERTVQE NKRKMEALNL HHLSAAVAHA PKTPSPMKHK RRRIIEAAVP 60 APSPPRRSRR LAHLPEVKYA EVAPDSERMK RWSPRKPAEI MCWGSGGSIS MEARLEAARK 120 AEELESQLDP EFPSFVKRML HSHVVRGFWL GLPSHFCDSY LPKHDSTITL VDEKDEEFET 180 NYLAYKKGLS GGWAGFALSH GILDGDSAVF QLIKPTTFKV HIIRATVDDD NKESE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 49 | 53 | KRRRI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast02G068700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010229077.1 | 1e-166 | B3 domain-containing protein Os03g0184500 | ||||
Swissprot | Q10QS9 | 1e-138 | Y3845_ORYSJ; B3 domain-containing protein Os03g0184500 | ||||
TrEMBL | I1H8X5 | 1e-165 | I1H8X5_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G72330.1 | 1e-166 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1756 | 38 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 1e-44 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast02G068700.1.p |
Publications ? help Back to Top | |||
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